KEGG   Serratia marcescens WW4: SMWW4_v1c13000
Entry
SMWW4_v1c13000    CDS       T02448                                 
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
smw  Serratia marcescens WW4
Pathway
smw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SMWW4_v1c13000 (rhlE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smw03019]
    SMWW4_v1c13000 (rhlE)
Enzymes [BR:smw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SMWW4_v1c13000 (rhlE)
Messenger RNA biogenesis [BR:smw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SMWW4_v1c13000 (rhlE)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 UTP25 AAA_22 UvrD-helicase DUF5693
Other DBs
NCBI-ProteinID: AGE17104
Position
1440851..1442230
AA seq 459 aa
MSFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSKHDHPVKGRRPVRALILTPTRELAAQIGENVDAYSKHLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGRIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPTIKAEPIINGRQGGGRGAPRGNGGGQRSGNGGGQRSGNAN
GGQRENRGNANGNARPQGDGQRRSGAPSSRRPRNRKPAE
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgtcatttgaaaccctcggcttaagtgctgaaattgtgcgcgctgttgaagaacagggc
tatcgtgaaccgacgccaatccagcgtcaggctatccctgtcgtgcttgaaggtcgtgac
ctgatggccagcgcccagaccggcaccggtaaaaccgccggttttaccctgccgctgttg
cagctgctgagcaagcatgaccatccggtcaagggccgtcgcccggtgcgcgcgctgatc
ctgacgccaacccgtgagctggcggcgcagatcggcgaaaacgtcgatgcctacagcaaa
cacctgcgcctgcgttcgctggtggtgtttggcggcgtgagcatcaacccgcagatgatg
aagctgcgcggcggcgtcgatatcctggtggcgacgccgggccgtctgctggatctggag
catcagaacgcggttgacctgtccaaaatcgaaattctggtgctggatgaagcggaccgc
atgctggacatgggctttatccacgacattcgccgcgtgctggccaagctgccggccaag
cgccagaacctgctgttctccgcgaccttctccgacgacatcaaggcgctggccaacaag
ctgctgcataacccggcctcggtggaagtggcgcgccgcaacaccgcgtccgagcagatt
gagcagagcgtgcacttcgtcgacaagaagcgtaagcgggaactgctgtcgcagatgatc
ggcgaaggcgactggaaacaggtgctggtgtttacccgcaccaagcacggcgccaaccat
ctggcggaacagctgaacaaagacggcatcactgccgcggcgatccacggtaacaagagc
cagggcgcccgtacccgcgcgctggccgatttcaaagacggccgcatccgcgtgctggtg
gcgactgacatcgcggcgcgcggtctggatatcgaccagctgccgcacgtggtgaactac
gagctgcctaacgtgccggaagactatgtgcaccgtatcggccgtaccggccgcgcggag
cgtaccggtgaggctatctcgctggtgtgcgtggatgagcacaagctgctgcgcgacatc
gagcgtctgctgaagcgtgaaattccgcgcattgcgctgccgggctacgagccggatccg
accatcaaggccgagccgatcatcaacggccgtcagggtggcgggcgcggcgcgccgcgc
ggcaacggcggcggccagcgttccggtaacggcggcggtcagcgcagcggtaacgcgaac
ggcggccagcgtgaaaaccgtggcaacgctaacggtaacgcccgcccgcagggtgatggc
cagcgtcgttccggcgcgccgtcttcgcgccgcccgcgcaaccgcaaaccggccgaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system