KEGG   Sphingomonas melonis: BJP26_15845
Entry
BJP26_15845       CDS       T04509                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smy  Sphingomonas melonis
Pathway
smy03410  Base excision repair
smy03430  Mismatch repair
smy03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:smy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BJP26_15845
   03430 Mismatch repair
    BJP26_15845
   03440 Homologous recombination
    BJP26_15845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smy03400]
    BJP26_15845
DNA repair and recombination proteins [BR:smy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     BJP26_15845
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     BJP26_15845
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BJP26_15845
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB
Other DBs
NCBI-ProteinID: AOW24843
Position
complement(3400187..3401941)
AA seq 584 aa
MSPVLGVTHSILGQPWHWRSLAADGRDGFGTDDLVTQLLLARGAPREALEQHRAPSIRAF
MPDPSVFRDMDRAAVRLADAVEARESIAVFGDYDVDGATSAALLILVLRDLGIEARPYIP
DRLLEGYGPSGDALVRLAQEGASLIVTVDCGAQAFDALDMAHAHPVDVVVVDHHKCAAAL
PRAHALVNPNRLDEDEGAAHGHLAAVGVCFLLAAALIRELRRRGVFASRAEPRLIDHLDI
VALGTVADVAQLRGLNRAFVAQGLKVMAQRRNIGVDALIQASRLTRAPTCSDLGFALGPR
INAGGRVGRADLGVRLLTTQDPAEARSIAEELDRLNDERRLIESGVQEAADAMIASDRAV
AVVAGEGWHPGVIGIVAGRLKEKLGRPAIVIAIDEHGVGKGSGRSIAGVDLGAAVLAAKE
HGLLVAGGGHAMAAGLTIAADQVAAFTDFLEERLAAAVTRAIGERALLVDAVLAPGGVNP
ALVDSLDVGGPYGMGWPAPRIAAGPVRIIKADVVGNGHVRAIVAGDDGRSFKAVAFRAAD
SALGQALLAAAPHRRLWLAGRAKIDDWGSRPAAELHLEDAAWAD
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgtcccccgttctcggcgttacccactcgattctcggccagccctggcattggcgcagt
cttgccgccgacgggcgagacggcttcggcaccgacgatctcgtcacacagttgctgctc
gcccgcggtgccccgcgcgaggcgctggagcagcatcgcgcgccctcgatccgcgcattc
atgcccgacccctcggtcttccgcgacatggaccgcgccgccgtccgcctcgccgacgcg
gtcgaagcccgtgagagcatcgccgtcttcggcgattacgacgtcgacggcgccacctcc
gccgcccttctcatcctcgttctgcgcgacctcggcatcgaggcccgcccctatatcccc
gaccgcctgctcgaaggctatggcccgtcgggcgacgcgctcgtccgcctggcgcaggaa
ggcgcctcgctgatcgtcaccgtcgattgcggcgcgcaggcgttcgatgcgctcgacatg
gcgcacgcccacccggtggacgtcgtcgtcgtcgaccaccacaaatgcgccgccgccctc
ccccgcgcccatgctctggtcaatcccaaccggctcgacgaggacgaaggcgccgcgcat
ggccacctcgccgcggtcggcgtttgcttcctgctcgccgccgcgctgatccgcgagctg
cgccgccgcggtgtcttcgccagccgcgccgaacccaggctgatcgaccatctcgacatc
gtcgcgctcggcaccgtcgccgacgtcgcgcaattgcgcggcctcaaccgcgcgttcgtc
gcgcaggggctgaaggtgatggcgcagcgccgcaacatcggcgtcgacgcgctgatccag
gcgtcgcgcctcacccgcgcgccgacgtgcagcgacctcggcttcgcattgggcccccgc
atcaacgcgggtggccgcgtcggccgggccgacctcggcgtacgcctgctcaccacgcaa
gaccccgccgaagcccgctcgatcgccgaggagctcgaccgcctcaacgacgagcgccgc
ctgatcgaaagcggcgtacaggaagccgccgatgcgatgatcgcgagcgaccgcgcggtc
gccgtcgtcgcgggcgagggctggcaccccggcgtcatcggcatcgtcgccgggcgattg
aaggaaaagctcggccgccccgcgatcgtcatcgcgatcgacgaacacggcgtcggcaag
ggatcgggccggtcgatcgccggcgtcgacttgggcgctgcggtactcgccgccaaggaa
cacggcctgctcgtcgccggcggtggccatgcgatggccgcaggcctcaccatcgccgcc
gatcaggtcgccgctttcaccgactttctagaagagcgcctcgccgccgccgtcacccgt
gcgatcggcgagcgtgcgctgctggtcgacgccgtgctcgcccccggcggcgtcaatccg
gcactggtcgattcgctcgatgtcggcggcccctatggcatgggctggcccgcgccgcgc
attgccgctggcccggtccgcatcatcaaggccgacgtggtcggcaacggccatgtccgc
gccatcgtcgcgggcgacgacggccgcagtttcaaggcggtcgccttccgcgccgccgac
agcgcgctggggcaggcgctgctcgccgccgccccgcaccgtcgcctgtggctcgccggc
cgcgccaagatcgacgattggggcagccgccccgccgccgaactgcatctggaagacgcc
gcctgggccgattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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