KEGG   Sphingomonas sp. NIC1: A7E77_14055
Entry
A7E77_14055       CDS       T04479                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
snj  Sphingomonas sp. NIC1
Pathway
snj03030  DNA replication
snj03430  Mismatch repair
snj03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:snj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A7E77_14055
   03430 Mismatch repair
    A7E77_14055
   03440 Homologous recombination
    A7E77_14055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:snj03032]
    A7E77_14055
   03400 DNA repair and recombination proteins [BR:snj03400]
    A7E77_14055
Enzymes [BR:snj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     A7E77_14055
DNA replication proteins [BR:snj03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     A7E77_14055
DNA repair and recombination proteins [BR:snj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     A7E77_14055
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 COE1_HLH DUF655 tRNA_anti-codon
Other DBs
NCBI-ProteinID: ANC87917
Position
2984798..2988304
AA seq 1168 aa
MAHSGFVPLRIFSSYTMLDGAIDPKAIAKQAKAQKFPAAGLTDRNGLYAAMAFSDAAKKD
GVQPVIGTMLCVARPDMPDGVAAPLDWIALYAQDTTGYDNLCALVSMAHLDRPIELPAHV
DFAALEGRTDGLIALTAGAEGGLARLFHEDQPDRARAYCDRLQALFPDRLYIELVRRGDA
VEEAAEQALIDLAYDRDLPLVATNPCCFSDSGFLDAHDAMLCIAHSTYVESEDRVRSCPD
AWLKPAEVMKQLFADLPEAIDNTLVVAQRCAVMAPYRKPILPSLAGDRDGEAAMLRDQAA
AGLEARLDRIEELGAQPDDPNWRDAYRERLAFEVNVIVQMGFPGYFLIVGDFIKWAKDHD
IPVGPGRGSGAGSVVAWALTITDLDPMKLGLLFERFLNPERVSMPDFDIDFCETRRGEVI
RYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWDLKR
ALNGVPELAKEYANDNQVRRLLDLATKLEGLPRHSSTHAAGVVIGDRPLSQLVPLYRDPR
SDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLKKAVQLLNKRGISIDLDALPWDDEATYK
LLQKGDTVGVFQLESEGMRRTLSAVRPTNFGDIIALVSLYRPGPMDNIPSFGRRKQGTEE
ILYPHPLLEPILKETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIKAEMDAQRA
TFVAGCAEHNGIKADYANQLFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPHEFFA
ASMCYDMAQTDKLCIFVDDMRRLGVDIVGPDINQSDAEFDVQTVGEGEERRLAVRYALGA
LKSVGEGAMEKLIVERVAAGPFKSLDDLANRVDPRLINKRQLETLAAAGAFDAIEPNRAA
VHAVAETILGLAASTHAGRTSGQGGLFGGDEVAGDTIRLPQGLRWTMAQAMEQEKDAFGF
YFSAHPVDRHAHLAKMHGARQYVALTELRIPEDGTRAGATMAVLVEDARWRTSARGKRYM
MATLSDASGQFVATCFDDGVAAELEEAARCGGCGLITVELDRRPGEETPRVSVKRIQPFE
GLASMARFTIEARVATAEAFAALATLLGEARGARGEVRARIPAGDGEVVVLLGRDFLLDL
ELVEAIQAIPGISNVALDRVASQLRAVG
NT seq 3507 nt   +upstreamnt  +downstreamnt
atggctcattcgggtttcgtgccgcttcgcattttttcgtcctacacgatgctcgacggg
gcgatcgatccgaaggcgatcgccaagcaggccaaggcgcagaagtttcccgcggccggc
ctgaccgatcgcaatgggctatacgcggcgatggccttttcggacgcggcgaagaaggac
ggcgtgcagccggtgatcgggacgatgctgtgcgtcgcacggccggatatgcccgacggc
gtcgccgcgccgctcgactggatcgcgctctatgcgcaggatacgacgggctacgacaat
ctgtgcgcgctggtcagcatggcgcatctcgaccgaccgatcgaattgccggcgcatgtc
gatttcgctgcgctggaagggcgaaccgatggcctaatcgcgctcaccgcgggggccgaa
ggcggcttggcgcgcctgttccacgaggatcagcctgaccgcgcgcgcgcctattgcgac
cgattgcaggcgctgttccccgaccggctgtacatcgaactcgtccgccggggcgacgcg
gtggaggaagcggccgagcaggcgctgatcgaccttgcctatgatcgcgacctgccgctg
gtcgcgaccaatccgtgctgcttttccgacagcggctttctcgacgcgcacgatgccatg
ctgtgcatcgcgcattcgacctatgtcgaaagcgaggatcgcgtccgttcgtgccccgat
gcgtggctgaaacccgccgaggtgatgaagcagctgttcgccgatctgcccgaggcgatc
gacaacacgctggtcgttgcgcagcggtgcgcggtgatggcgccctatcgcaagccgatc
ctgcccagcctggcgggcgatcgcgatggcgaggcggcaatgctgcgcgatcaggcggca
gcaggactggaagcgcggctcgaccggatcgaggaactgggtgcgcagcccgacgatccc
aattggcgcgatgcgtatcgcgagcggctggcgttcgaggtgaacgtcatcgtccagatg
ggttttcccggatacttcctgatcgtcggcgacttcatcaaatgggcgaaggatcacgac
attccggtggggccgggtcgtggctcgggcgcgggctcggtcgttgcctgggcgctgacg
atcaccgacctcgacccgatgaagctgggcctgctgttcgagcgattcctgaacccggaa
cgcgtgtcgatgcccgacttcgacatcgacttttgcgaaacccggcgtggcgaggtcatc
cgctacgtgcaggagaaatacggccgcgatcaggtcgcgcagatcatcaccttcggtaag
ctgaaggcgcgcgcggtgttgaaggacaccggccgcgtgctccagatgagctatgggcag
gtcgaccggctcgccaagctggtgcccaatcacccgaccgatccgtgggacctgaagcgc
gcgctgaacggcgtgcccgagttagcgaaggaatatgccaacgacaatcaggtccgccgc
ctgctcgacctcgcaaccaagctggagggcctgccgcgccattcgtcgacgcacgccgcg
ggcgtggtcatcggcgaccggccgctgagccagctcgtcccgctctatcgcgatccgcgg
tccgacatgccggtgacgcagttcgacatgaaatatgtcgagggcgcggggctggtgaag
ttcgacttcctcggcctgaagacgctgtcggttctgaagaaggccgtacaactgctgaac
aagcggggcatttcgatcgacctggatgcgctgccctgggacgacgaggcgacgtacaaa
ctgctccagaagggcgacacggtcggcgtgttccagctggaatcggagggcatgcgccgc
acgctcagcgccgtccgcccgaccaatttcggcgacatcattgcgctcgtgtcgctgtat
cgccccggcccgatggacaacattccctcgttcggccggcgcaagcaggggaccgaggag
atcctctacccccacccgctgctggaaccgatcctgaaggagacctacgggatcttcgtc
tatcaggaacaggtgatgcaggccgcgcagatcctggcgggctacagcctgggcggcgct
gatctgctgcgccgcgcgatgggcaagaagatcaaggcggagatggacgcgcagcgcgcg
accttcgtcgccggttgcgccgagcataacggcatcaaggcggactacgccaaccagctg
ttcgacttgatcgacaagttcgcgggctatggcttcaacaagagccatgccgcggcctac
gccctgctcgcctatcagaccgcgtggctgaaggcgcaccacccgcacgaattcttcgcc
gcgtcgatgtgttacgacatggcgcagaccgacaagctctgcatcttcgtcgacgacatg
cgacggctgggcgtcgatatcgtcgggccggacatcaaccagagcgatgccgagtttgac
gtgcagacggtcggggagggcgaggaacgccgcctcgcggttcgctatgcattgggcgcg
ctgaagtccgtcggcgaaggcgcgatggagaaactgatcgtcgagcgggtcgcggccggg
ccgttcaagagtctcgacgaccttgccaatcgcgtcgatccgcgcctgatcaacaagcgg
cagctcgaaacgctggccgcggcgggggcgttcgacgcgatcgagccgaatcgcgccgcg
gtgcatgccgtcgccgagacgattctgggcctcgccgcctcgacgcatgcggggcggacg
agcggtcagggtggcctgttcggtggggatgaggtggccggcgacacgatccggctgccg
caggggctgcgctggacgatggcgcaggcgatggagcaggaaaaggacgccttcggcttc
tatttctccgcgcatcccgtcgaccggcacgcgcatctcgcgaagatgcatggcgcgcgg
caatatgtcgcgctgaccgagttgcgcattccggaggacggcacgcgcgcgggggcgacg
atggcggtgctggtggaggatgcgcgctggcgcacctcggcccgcggcaaacggtacatg
atggcgacgctgtcggatgcgagcggccagttcgtcgcgacatgcttcgacgatggcgtc
gcggcggaactggaagaggcagcgcgctgtggcgggtgcggcctgatcacggtcgaactc
gatcggcggccgggcgaggaaacgccgcgcgtctcggtcaagcgcatccagccgttcgag
gggctggcgtcgatggcgcgcttcacgatcgaggcgcgggtggcgacggcggaggccttc
gcggcgttggcgaccttgctgggtgaggcgcgcggtgcgcgcggcgaagtgcgcgcgcgc
attccggcaggtgatggcgaggtggtcgtcctgctcgggcgcgatttcctgctcgacctc
gaactggtcgaggcgatccaggcaattccggggatcagcaacgtagcgctcgaccgggtc
gcttcgcagttgcgggcggtgggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (38)   

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