KEGG   Spinacia oleracea (spinach): 110780142
Entry
110780142         CDS       T05137                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110780142
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:soe03019]
    110780142
Messenger RNA biogenesis [BR:soe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110780142
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     110780142
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 110780142
NCBI-ProteinID: XP_021840259
UniProt: A0A9R0I2D2
Position
3:4836666..4845207
AA seq 579 aa
MHGGFNVPNMSGSLTSRNSSMNNVASGGVQQPTGNIPGGRFASNNIPIALSQMTHGSSHG
GYSGVTNRGGMNVVGSPGYSSNTNGVGGSIPGILPTSAAISNRSAVPGLGVSPVLGNSGP
RVTGSVGSMVGSGNIGRSIGSGGGLSVPGLASRLNMSANSGSGNLGVQGSNRLTGGVLQQ
ASPQMLSMFGNSYPSAGGPLSQNHVQSVNSLSSMGMLSDDNSNDAPFTLNDFPQLGSRPN
SAGGPQGQIGSMRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGSADYGIDFQQKEQIH
DNGVPMQSQHFSMGRSPGFNLGGMYSSHRPQQQQHSLSSSMPPGISLRSINSPGGVSNMN
TYEQQFLQQYQQHNQSQFRLQQLPSLNQTFRDQGIKPIQSPQAAPDPYGLLGLLSVIRMS
DPDLTSLALGLDLTTLGLNLNSSENLHKTFASPWAEEPAKGEPEFLIPECYHEKQPPPLS
QAYFAKFQLPTLFYIFYSMPRDEAQIYAANELYNRGWFYHKDIRVWFMRAPNMEPLVKTN
AYERGSYVAFDPNTWDTTVKENFVIHYELVEKRPTLHHQ
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgcatggtggctttaatgttcccaatatgtcgggttcacttacatccagaaattcatca
atgaataacgtcgcttctggtggcgttcaacaaccaacagggaacattccagggggtaga
tttgcatcaaataatatccctattgctctctctcagatgacccatgggagctcacatggt
ggatattcaggagtcacaaatagaggaggtatgaatgttgtaggaagccctggatatagt
agtaacacaaatggtgttggtggttctattcctgggattctcccgacttctgctgcaatt
agtaatcgtagtgctgttccaggcctaggagtttcgcccgtgttgggaaattcaggtcct
cgagttactggctcagtgggaagtatggttggcagtggcaacattgggaggagtataggt
tcaggtggaggactatctgtgcctggtcttgcttctcgcttgaatatgtcggcaaacagt
ggatctgggaatttaggagtgcaaggatcaaatagattaacgggaggtgtgctccaacaa
gcttctccgcagatgctttctatgtttggaaactcatatccttctgccgggggcccactt
tcgcagaaccatgtccaatcagtgaatagtttaagttccatgggaatgttaagcgatgat
aattccaatgacgccccttttacgttaaacgactttcctcagttaggtagccgccctaac
tctgctggaggtccgcaaggacaaataggttctatgcgaaaacaaggcctcggtgttagt
cccattgttcagcagaaccaggaatttagcatccaaaatgaggattttcctgccttacca
ggtttcaaaggtggaagtgcagattatgggatagattttcagcaaaaggaacagattcat
gataatggtgtaccgatgcaatctcaacacttctctatgggaaggtcgcctggattcaac
ttaggaggaatgtactcatctcaccgtccacaacagcagcagcattcactttctagcagc
atgccccctggcataagcttaaggtccataaactctcccggtggggtttctaatatgaat
acttatgagcagcagtttttgcagcagtatcaacaacataaccagtcacaatttcgccta
caacagttgccatctctcaatcagacttttagagatcagggcataaagccaatacaatct
ccacaagctgctccagatccatatggattacttggcctattgagtgtgataagaatgagc
gatcctgatctgacttctcttgccctcggactcgatttaacaacgttgggattgaatttg
aattcatcagaaaatcttcacaaaacttttgcctccccttgggccgaagagccagccaag
ggtgaacctgagttcttgatacctgaatgttatcatgaaaaacaacccccccctctaagt
caagcttattttgcgaagtttcagctgccaacactgttctacatcttttacagcatgcca
agagatgaagcccagatatatgcagccaatgaactttataacagaggttggttctatcac
aaagacatccgggtttggtttatgagagctcctaacatggaacctcttgttaagacgaac
gcatatgaaagaggttcttatgttgcctttgatcccaatacatgggatacaactgttaag
gaaaatttcgttatccattatgaacttgttgagaaaagaccgactcttcatcaccaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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