KEGG   Spinacia oleracea (spinach): 2715633
Entry
2715633           CDS       T05137                                 
Symbol
rpoC1, SpolCp013
Name
(RefSeq) RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    2715633 (rpoC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:soe03021]
    2715633 (rpoC1)
   03400 DNA repair and recombination proteins [BR:soe03400]
    2715633 (rpoC1)
Enzymes [BR:soe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     2715633 (rpoC1)
Transcription machinery [BR:soe03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     2715633 (rpoC1)
DNA repair and recombination proteins [BR:soe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      2715633 (rpoC1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 2715633
NCBI-ProteinID: NP_054923
UniProt: P11705
Position
Pltd:complement(19591..22380)
AA seq 677 aa
MIDQYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
RLPSYIANFLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFT
TQGFDTFRNREISTGAGAIREQLADLDLRTIIDYSFAEWKELGEEGSTGNEWEDRKVGRR
KDFLVRRMELVKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
YRNNTLTDLLSTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLA
SNIGVAKRKIREKEPIVWKILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY
ILTSGNRRGICANRYNPWNHKTYQNERIDDTNYKSMKEPFFCNFYDAIGAYRQKRIHLDS
PLWLRWQLDQRIIASKEAPIEVHYESLGTYHEIYAHYLIIRSVKKEIIDIYIRTTVGHIS
LYREIEEAIQGFYQACS
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgatcgatcagtataaacatcaacaactccgaattggatcagtttctcctcaacaaata
agtgcttgggccacaaaaatcctacctaatggagagatagttggagaggtgacaaaacct
tatacttttcattacaaaaccaataaaccagaaaaagatggattattttgcgaaagaatt
tttgggcctataaaaagtggaatttgtgcttgtggaaattatcgagtaatcggagatgaa
aaagaagacccaaaattttgtgaacaatgcggagtcgaatttgttgattctcgaatacga
aggtatcaaatgggctatattaaattggcatgcccggtaactcacgtgtggtatttgaaa
cgtcttcctagttatatcgcgaattttttagataaacctcttaaagaattagagggccta
gtatactgcgatttttcatttgctaggcctatagcgaaaaaacctacttttttacgatta
cgcggtttattcgaatatgaaatccaatcctggaaatacagcatcccccttttttttact
acccaaggttttgatacatttcgaaatagagaaatatctactggagcaggtgctattcga
gaacaattagccgatttggatttgcgtactattatagattattcattcgcagaatggaaa
gagttaggggaagaagggtctacaggaaatgaatgggaagaccgaaaagttggaagaaga
aaggattttttagttagacgcatggaattagttaagcattttattcgaacaaatatagaa
ccagaatggatggttttgtgtctattacctgttcttcctcccgagttgagaccgatcatt
cagatagatggaggtaaattaatgagttcggatattaatgaactttatagaagagtcatc
tatcggaacaatactcttactgatctattatcaacaagtagatctacgccgggagaatta
gtaatgtgtcaggagaaattagtacaagaagccgtagatacacttcttgataatggaatc
cgtggccagccaatgagggatggtcataataaagtttacaagtcattttcagatgtaatt
gagggtaaagagggaagatttcgtgagactttacttggtaaacgggtcgattattccgga
cgttccgtcattgtcgtaggcccttcactttcattacaccgatgtggattgcctcgtgaa
attgcaatagagctcttccagacatttgtaattcgtggtctaattaggcaacatcttgct
tcgaacataggagttgctaagcgtaaaattcgggaaaaagagccgattgtatggaaaata
ctgcaggaagttatgcaggggcatcctgtattattaaatagagcacctactcttcataga
ttaggtatacaggcgttccaacctattttagtggaagggcgcgctatttgtttacatccg
ttagtttgtaaaggattcaacgcagactttgatggggatcaaatggctgttcatgtacct
ttatctttggaggctcaagcagaggcccgtttacttatgttttctcatatgaatcttttg
tctccagctattggcgatcccatttccgtaccaacccaagatatgcttattggactctat
atattaacgagcgggaatcgtcgaggtatttgtgcaaatagatataatccatggaatcac
aaaacctatcaaaatgaaagaattgatgatactaattataagtctatgaaagaacccttt
ttttgtaatttctatgatgcaattggagcttatcgtcagaaaagaattcatttagatagc
cctttgtggctccggtggcaactagatcaacgcattattgcttcaaaagaagctcccatt
gaagttcactatgaatctttgggcacctatcatgagatttatgcgcactatctaataata
agaagtgtaaaaaaagaaattattgatatatatattcgaactactgttggtcatatttct
ctttatcgagaaattgaagaagctatacaaggattttatcaagcctgctcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (25)   

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