KEGG   Spinacia oleracea (spinach): 2715634
Entry
2715634           CDS       T05137                                 
Symbol
rpoC2, SpolCp012
Name
(RefSeq) RNA polymerase beta'' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    2715634 (rpoC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:soe03021]
    2715634 (rpoC2)
   03400 DNA repair and recombination proteins [BR:soe03400]
    2715634 (rpoC2)
Enzymes [BR:soe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     2715634 (rpoC2)
Transcription machinery [BR:soe03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     2715634 (rpoC2)
DNA repair and recombination proteins [BR:soe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      2715634 (rpoC2)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_3 Peptidase_M23
Other DBs
NCBI-GeneID: 2715634
NCBI-ProteinID: NP_054922
UniProt: P11704
Position
Pltd:complement(15357..19430)
AA seq 1357 aa
MAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYSTSEYLRQEMNPNFR
MTDPYNPVHIMSFSGARGNVSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRRDCGTIRGISVSPQNSTMPERIL
IQTLIGRVLADDIYMGSRCIATRNQDIGVGLVNRFITLRTQLISIRTPFTCRSASWICRL
CYGRSPTHGGLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI
QFNEDLVHPTRTRHGHPAFLCYIDLYVTIESDDILHNVNIPPKSFLLVQNDQYVESEQVI
AEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGK
PYRSSVVPFSLSKDQDQMNTHSLSFEQIYISNPSVTNDQVKDKLSDSFSKKEDRITDYSE
LNRIGHCNLIYPAKNLDLLAKKRRNRFIIPFQGSQERKKELMSLSGISIEIPINGIFRKN
SIFAYFDDPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPE
EVHILAGSSSIMVRNNSIIGVDTWITLNTRSRIGGVVRVERKKKKIELTIFSGDIHFPGE
TDKISRHSGILIPPSRKNSKDSKNLKKWIYVQRITPTKKKYFVLVRPVVPYEITDGINLA
TLFPQDLLQERDNVQLRVVNYILYGNGKVTRGISDTSIQLVRTCLVLNWNQDKKGSSIEE
ARGSFVEVRTNGMIQDFLKVNLVKPAISYISKRNDPSSEKKEGSDHTNMNPFYSIYIYPK
TKLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFRIGPFKGVKYPKELIKKDPLIPIR
NSFGPLGTALQIANFFSFYYLITHNQILVTNYLQLDNLKQTFQPFKFQYYLMDENGRIYN
PDPCSNIIFNPFKLNWYFLHYHFCEETSTKIDLGQFVCENVCITKKGTHLKSGQVLIVQF
DSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR
SIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQI
HNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITR
ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSS
QHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcagaacgggccaatttggtctttcacaataaagcgatagatggaactgccatgaaa
cgacttattagtagattaatagatcattttggaatggcatatacgtcacacatcctagat
caactaaagactctgggtttccagcaagccactgctacatccatttcattaggaattgat
gatcttttaacaataccttctaaaggatggctagtccaagatgctgaacagcaaagtttg
attttggaaaaacaccaccattatgggaatgtacacgcggtagaaaaattacgtcaatcc
attgagatatggtattctacaagtgaatatttgcgacaagaaatgaatcccaattttagg
atgactgacccttataatccagtccatataatgtctttttcgggagctagaggaaatgtg
tctcaggtacatcaattagtaggtatgagaggattaatgtcggatccacaaggacaaatg
attgatttacctattcaaagcaatttacgggaaggactctctttaacagaatatataatt
tcttgttacggagcccgcaaaggggttgtggatactgctgtacgaacatccgatgctgga
tatctcacgcgcaggcttgtcgaagtagttcaacatattgttgtgcgtagaagagattgt
ggcaccattcgaggtatttctgtaagtcctcaaaacagtacgatgccggaaagaattttg
atccaaacattaattggtcgtgtattagcagacgatatatatatgggttcacgatgcatt
gccacccgaaatcaagatatcggggttggacttgtcaatcgattcataacgcttcgaacc
caactaatatccatccgaactccttttacttgtaggagtgcgtcttggatctgtcgatta
tgttatggccggagtcctactcacggcggcctggttgaattgggagaagctgtaggtatt
attgcaggtcaatccattggggaacctggtactcaactaacattaagaacttttcatacg
ggtggagtattcacaggagggactgcagaacatgtacgagccccttctaatggaaaaatc
caattcaatgaggatttggttcatcccacacgtacacgtcatggacaccctgcctttcta
tgttatatcgacttgtatgtcactattgagagtgacgatattctacataatgtgaatatt
ccgccaaaaagttttcttttagttcaaaatgatcaatatgttgaatctgaacaagtgatt
gctgaaattcgcgcagggacatccaccttgaattttaaggaaagggttcgaaaacatatt
tattctgattcagaaggagaaatgcactggagtactgatgtgtaccatgcacccgaattt
acatatggtaatgttcatctcttaccaaaaacaagtcatttatgggtattatcaggaaag
ccgtacagatcgagtgtagtccccttttcgctctccaaggatcaagatcaaatgaacact
cattctctttctttcgaacaaatatatatttctaacccctcagtcactaacgatcaagta
aaagataaattatcggactcttttagtaaaaaagaggataggattacggattattcagaa
cttaatcgaataggtcattgtaatctcatctatcctgcaaaaaatttggatttattggca
aagaaacgaagaaatagatttattattccatttcaaggaagtcaagaacgaaaaaaagaa
ttaatgtccctttccggtatctcgattgaaatacccataaatggtattttccgtaaaaat
agtatttttgcttatttcgatgatcctcgataccgaagaaagagttcgggaattacaaaa
tatgggactatagagatgcattcaatcgttaaaaaagaggatttgattgaatatcgagga
gtcaaagaatttcgaccaaaataccaaatgaaagtcgatcggttttttttcattcctgaa
gaagttcatatcttagccggatcttcgtccataatggtacgcaacaatagtatcattgga
gtagatacgtggatcactttaaatacaagaagccgaataggcggggtggtccgagtggag
aggaaaaaaaaaaagattgaacttaccattttttcgggagatatccattttcccggggag
acagataagatatcccgacacagtggcattttgataccaccaagcaggaaaaattccaag
gactcaaaaaatttaaaaaaatggatctatgtccaacggatcacccctactaagaaaaaa
tattttgttttggttcggccggtagtcccatatgaaataacggacggtatcaatttagca
acacttttccctcaggatttgttgcaggaaagggataatgtgcaacttcgagttgtcaat
tatatcctttatggaaatggtaaagtcactcgaggaatttctgacacaagtattcaatta
gtacgtacttgtttagtattgaattggaatcaagataaaaaaggttcttctatcgaagag
gcccgcggttcctttgttgaagtaagaacaaatggtatgattcaagatttcttaaaggtc
aatttagtgaaacccgctatttcatatatcagtaaaagaaatgatccatcatccgaaaaa
aaggagggatcagatcataccaatatgaatccattttattccatttatatttatccaaag
acaaaacttcaaaaatcatttaaccaaaaccaaggaactgtccgtacgttgttgggtata
aacaaagaatgtcaattttttttaattttgtcatcatccaattgttttcgaataggtcca
ttcaagggtgtcaaatatcccaaagaattaattaaaaaagatcccctaattccaattagg
aattcatttggtcctttaggaacagcccttcaaattgctaattttttttcattttactat
ttaataactcataatcagatcttggtaactaattatttgcaacttgacaatttaaaacaa
acctttcaaccatttaaatttcaatattatttaatggatgaaaatggaagaatttataat
cccgatccatgcagtaacatcatttttaatccattcaagttgaattggtattttcttcat
tatcatttttgtgaagagacatccaccaaaattgatcttggacaatttgtttgtgaaaat
gtatgtataaccaaaaaaggaacgcacctaaaatcgggtcaagttctaattgttcaattt
gactctgtagtaataagatcggctaagccttatttggctactccaggagcaacacttcat
ggtcattatggagaaatcatttatgaaggggatacattagttacatttatatatgaaaaa
tcgaggtctggtgacataacgcaaggtcttccaaaagtggaacaagtcttagaagttcgt
tcgattgattcaatatccatcaatctagaaaagaggattgatagttggaacgaacgtata
acaagaattcttggaagtccttggggattcttgattggggctgagctaactatagcgcaa
agtcgtatttctttggttaacaagatccaaaaggtttatcgatcacaaggggtgcagatc
cataatagacatatagaaattattgtacgtcaaataacatcaaaagtcttggtttcagaa
gatggaatgtctaatgtttttttgcccggagaactaattggattgtttcgggcggaacga
acgggacgcgctttggaagaagcgatatgttaccgcgctaccttattgggaataacgaga
gcatctctgaatactcaaagttttatctccgaagcgagttttcaagaaactgctcgagtt
ttagcaaaagcagctctacggggccgtattgattggttgaaaggactaaaagaaaacgtt
gttctgggggggatgatacctgttggtaccggattcaaaggattcgtacaccattcaagt
caacataaggacattcctttgaaaacaaaaaagcagaatttattcgagggagaaatggga
gatattttgttttaccacagagaattatttgagtcttgtctttcaaagaattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (51)   

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