KEGG   Solanum tuberosum (potato): 102592601
Entry
102592601         CDS       T02981                                 
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102592601
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sot03019]
    102592601
   03400 DNA repair and recombination proteins [BR:sot03400]
    102592601
Enzymes [BR:sot01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     102592601
Messenger RNA biogenesis [BR:sot03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     102592601
DNA repair and recombination proteins [BR:sot03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      102592601
SSDB
Motif
Pfam: DEAD Helicase_C RQC HTH_40 HRDC RecQ_Zn_bind ResIII HAD_2
Other DBs
NCBI-GeneID: 102592601
NCBI-ProteinID: XP_006355761
Position
Un
AA seq 917 aa
MEMQSTLKKYFGYTEFRPYQKEIIEKILDGKDCLVIMATGSGKSLCYQVPPLITGKTAVV
ISPLISLMQDQVMALKQRGIKADYLSSAQTDRGVQSNAELGHYDILYMTPEKACALPTSF
WSRLLKAGMCLLAVDEAHCISEWGHDFRVEYKQLDKLRNVLLNVPFVGLTATATEKVRSD
IINSLLMKDHHAAIGSFDRKNLFYGVKSFSRSSQFIDQLVEEISKYVDNANSTIVYCTTV
KDTEEIFKSLLEAGIKAGIYHGQMANKAREEAHRSFIRDEFYVMVATVAFGMGIDKPNVR
YVIHYGCPKSLESYYQESGRCGRDGVPSACWLYYTRSDFGKADFYSAEARSASQRKAIME
AFSAAQHYCMLSTCRRKYLLDYFADEYAHDDCGNCDICTSSMKEKDLSREAFLLMACIQS
CGGCWGLNLPIGILRGSRSKKIVDAQFDKLPFHGLGKELSANWWKGLAYQLISRDYLVET
FKDMYKTVSVSEIGLQFLRSSNPDHQPPLFLPETPEMDLDEKNIDTPSETSEINGLAFKE
FEGFSQAETQLYKILIEERIKLARATGTAPYAVCGDQTLKRISLTRPSTKARLANIDGVN
QHFIKLYGDNFLQSIKRLSEACNLSLDGDPTSQTPVPSKTVTVPSNKKLTPAKFEAWKMW
HEDGLTFKEIANFPGRAVAIKEQTVLEYILEAAREGCKMNWTRFCEETGLTRETFLSIQN
AASKVGREKLKPIKTELPEEVSYGQIKAYLTMQEAGVSAEVFSSKSEQSCNEDECLTEIS
EVLQNSIIPSDMQGDDDIVEAPGITGINGASSPGKTEGAESHLLTEEIRKEAASSEGDFL
IHKKRQRVKAAEGESFRALVATEESILSWLKNFDDGVTLSDLLEHFNGSTEKSLVNLLCC
LEGEFLIYRKNNLYKLL
NT seq 2754 nt   +upstreamnt  +downstreamnt
atggaaatgcagtctactcttaagaaatattttgggtacacagagtttcgaccttatcaa
aaggaaatcatagagaagattttagatggaaaagactgtttggttataatggccaccggc
agtggcaaatcattgtgctatcaggttcccccactgataactggaaagactgctgtagtt
ataagtcctctcatctctttgatgcaagatcaggtcatggcattaaaacagaggggcatt
aaagctgactatctttcaagtgctcagactgatcgtggggtgcagtccaatgctgagttg
ggtcactatgatattctctatatgactccagaaaaggcttgtgctcttcctaccagtttc
tggtcaagattgttgaaagcagggatgtgtctcttggctgttgatgaagcacactgcatc
tcagaatggggtcacgatttcagggttgagtataagcagttggacaagctgcgtaatgtt
cttttgaatgttccatttgttggcttgacagcaactgctacagaaaaagttcggagtgac
attatcaactccttgctgatgaaagaccatcatgctgctattggctcatttgatcgcaaa
aatcttttttacggagtcaaatcttttagtcgtagttctcaatttattgatcagctggtg
gaggagatctctaaatatgtagataatgcgaattcaacaatagtatattgtacaactgtc
aaagacactgaagagatcttcaaatcacttcttgaggcaggaatcaaagctggaatctac
catggtcaaatggctaataaagcacgtgaggaggctcataggtcatttatcagagatgaa
ttctatgtcatggtcgcaactgttgcttttggcatgggtatagataaaccaaacgtaagg
tatgtgatacactacggctgcccaaagagtctggagtcttactaccaggaaagtggacga
tgcggcagagatggcgttccttcagcttgctggctttactacacaagaagtgactttgga
aaagctgatttctactctgcagaagctcgttcagcatctcaaagaaaagctattatggaa
gcattttctgctgcacaacattactgcatgctgtcaacttgtagaagaaaatatttgttg
gattactttgcagatgagtatgcccatgatgattgtggaaactgtgatatttgcactagc
tcaatgaaggaaaaggacttgtcaagagaagcatttcttcttatggcttgtattcagtca
tgtggaggctgttggggcttgaatctacccataggaattcttcgtggatctcgatccaag
aaaattgttgatgctcagtttgacaagcttccatttcatggtcttgggaaagaattatct
gcaaattggtggaagggactggcttaccaattgatttcacgtgattatttggtagaaacc
ttcaaagatatgtacaaaactgtgagtgtcagtgaaataggattgcagtttctgagatct
agtaaccctgatcatcaacctccactgtttttgccggagactcctgaaatggatcttgat
gagaaaaacatagatacacccagtgaaacgagtgagatcaatggtttggcttttaaggaa
tttgaaggattttcacaagctgaaactcaactgtacaaaatacttatagaagagagaatt
aagcttgccagagctactggaactgctccatatgcagtctgtggcgaccaaacattgaaa
aggataagcttgacaaggccttctacaaaagcaagactagcaaatatagatggcgtaaac
cagcatttcataaaactgtatggggataattttcttcaaagtattaagcgtctatcagaa
gcttgcaatctttctttggatggggatccaaccagtcaaacccctgttcccagtaagact
gtcacagttccaagcaataaaaagttaacaccagcaaaatttgaagcatggaagatgtgg
catgaggatggtcttacgttcaaagaaattgctaattttcccggtagagcagtagcaata
aaggaacaaactgtgctagagtatatactcgaagctgcacgagagggatgcaaaatgaat
tggaccaggttttgtgaggagactgggctgacaagagagacattcttaagtatccagaat
gctgcctcaaaagttggtagagaaaaattgaagcccataaaaaccgagttaccagaagag
gtaagttatggtcagataaaggcatacttgacgatgcaagaggcaggagtatcagctgaa
gtattttcatccaaatccgaacaaagttgcaatgaagatgaatgtttgactgaaatatca
gaagtactacagaactctattattccatctgacatgcaaggagatgatgacatagttgaa
gcacctggcatcactggtataaatggtgcttcttctcctggaaagactgaaggagcagaa
tctcatctcctgactgaggagattaggaaagaagctgcatccagtgaaggtgattttctc
attcataaaaaacgccagagggtcaaagcagcagaaggagaaagttttagggctctggtt
gccacagaagaatccatattgagctggctcaagaactttgatgatggggttaccctttct
gatctcttggagcacttcaatgggtccaccgagaaatctttagtgaatcttctttgttgt
cttgaaggtgagtttttgatatataggaagaacaatctatacaagcttttgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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