KEGG   Solanum tuberosum (potato): 102599663
Entry
102599663         CDS       T02981                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102599663
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sot03019]
    102599663
Messenger RNA biogenesis [BR:sot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102599663
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102599663
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 102599663
NCBI-ProteinID: XP_006342929
UniProt: M1C3H6
Position
Un
AA seq 128 aa
MSWASPEDIYTSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLESACERAIVGDL
YCDIPLGLYIIRGENVVLIGELDVDKEELPPHMTRVSEAEIRRAQKAERDSTDLKGSMRK
RMEFLDMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaagtccagaagatatctatacctccacttctcttgcaagttatcttgac
aagaaacttcttgtgctgttgcgagatgggcgaaagcttttaggaatacttcgttctttt
gaccaatttgctaatgctgttcttgaaagtgcatgtgagcgtgctattgttggtgatcta
tattgtgatatcccattaggtctttatattatacgtggggaaaatgttgtgttaattggt
gaactggacgtggataaggaggaacttcctccccatatgacacgtgtttcagaagctgag
ataagaagggcacagaaagcagaaagggactctacagatcttaaaggctcaatgaggaag
aggatggaatttcttgatatggattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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