KEGG   Spathaspora passalidarum: SPAPADRAFT_138105
Entry
SPAPADRAFT_138105 CDS       T03101                                 
Name
(RefSeq) hypothetical protein
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
spaa  Spathaspora passalidarum
Pathway
spaa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spaa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPAPADRAFT_138105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spaa03019]
    SPAPADRAFT_138105
Enzymes [BR:spaa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     SPAPADRAFT_138105
Messenger RNA biogenesis [BR:spaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPAPADRAFT_138105
  mRNA degradation factors
   3'-5' decay
    Pan complex
     SPAPADRAFT_138105
SSDB
Motif
Pfam: UCH_1 RNase_T PAN2_N UCH
Other DBs
NCBI-GeneID: 18870097
NCBI-ProteinID: XP_007375652
JGI: 138105
UniProt: G3AMW2
Position
Unknown
AA seq 1182 aa
MDGWNEIARIPTTKPTPAWPPNGPGRVRVPDSNPVISALRFDTMQNLIWYGDSFGYTKSL
TSSQTNPTLNPYQRSIQLFPYTKFKTCDGINNPVIELLPHKDGILSLSKNQIAFNNRRGI
PKFHASAASFHDNLFTNLNSMTFNCNSLNDVVVGTKLSLMKFDLHKPTVLTSFNHDGNVS
MVKNTSKLLTIAKGNGSLELFDPVSNTSIKTFNSHNGFISDMDVRGNYIATCGYSLRPKR
FHHHGHAPQSDFVVDPLVNIYDTRIMRAIAPIPFPAGATSVRFHPKLPNIVIVSSSTGQI
QFVDMFDQTNVYLYQADLSPPHNQMHTLSDSGAASLNNLEISDNGDFLLFNDNYSNLHLW
SITNISGVTSKDFVNFPSAIEEPDIPDPTLEENKIGIDDNVPLSCIGMPYYKDLLLSNYA
SDLKFVKEFARAPEGINADLLLESERNGGRFMLYDKAKYGPGNIVKKFDIVEGKTAIKNK
SQIPKFISERNGNGAEKNGTEEIPGIASEIIDESIFQYKSSNSSVIPNCYSRLQIQYSRF
GVRDFDFEFYNKTNGLYCGLENHTDNSYINSLLQLYRFSPVFYNKIVKNLLNEWLPCDLD
TILVNTEGSSILTELGYLFDMMDKAKGNNVKIYNFAQVVTHNKDAIAHHLINLDEMNHLN
SLDVRNLIISFNKFLLSQINSDLHVQSQDSIEEIMKLTYMVEVRGNESTCPVYDKSYGSI
LSLDLVTPPSNMLNKMSILINPHLNTTAAQQPPQLANIRRNVNILTYLEYSMNQVKLVPC
QQHQHAYPHSLEIKTTITSLPPVLVLNVNLSNEEFQLINGFRKWIIPEFYAVNQKDKFSF
KSMISPFDKANSAKYDLLGFVCEISHSSDFALGMHGLVTFVKLDQWYLFNDFLVMPIPEE
EVLDLSSPWKKPVVVIYQESSIAQTPFEYFNIETFGKLPNLNDSILYRDHFAGTIREGYK
KEYELLTKQEAPKADTLVAIDAEFVLLNPELLEVHYDGFKKLIKPKILSLARVSVLRGEE
ETAFIDDYVVHTAKIHDYLTSFSGIEDSDLDPIRSAKNLVTLQTAYRKLWLLLNLGVVFV
GHGLYNDFRCINLQVPKKQIRDTAEFYYKSDFKRQLGLKFLAYVLLKEKVQSNNHDSIED
AYTALMLYKKYLELTSQGMFESTLNFIYSEGQQMRFRVPEDN
NT seq 3549 nt   +upstreamnt  +downstreamnt
atggatggctggaatgaaatagcacgaatacccacaacaaagccaacaccagcatggcca
cccaatggaccaggaagggtaagagtaccggactccaatccagttatatctgcattgcga
ttcgatactatgcagaatctcatatggtatggtgattcctttggttatactaagtctttg
accagttcccaaacaaatccaacattgaatccgtatcagagaagtattcaattgttcccg
tatactaaattcaagacttgtgatggtatcaataatcctgtgattgagttgcttcctcac
aaagacgggattttatcgttactgaagaatcaaatagcatttaataatagaagaggaatc
cccaagtttcacgcttcagcagcttcttttcatgataatttattcactaatttaaactca
atgactttcaattgtaattcattgaatgatgttgtggttggaacaaagttgtcattgatg
aagtttgatttacataaacctacagtacttacatcattcaatcacgacggaaacgtctcc
atggttaagaacacttccaagttattgacaattgccaagggtaacggatcattagaactt
tttgatcccgtgtccaacacttccataaaaacattcaattcacataatgggtttatttcc
gatatggacgttagaggaaactatatcgctacttgtggatactcgttgcgtccaaagcgt
tttcatcatcatggacatgcaccacagagtgactttgtggttgaccctctagttaacatt
tatgatacaagaataatgagagcaattgcaccaattccattccctgccggtgctacttca
gtgagattccatccgaaattacctaatatcgtcatcgtttcttcaagcacaggccagata
caatttgttgatatgtttgatcaaaccaatgtatatctctaccaggctgatttgtctcca
cctcataatcaaatgcacactctctcggatagtggtgctgcatccttaaacaaccttgaa
attagtgataacggtgacttccttttgtttaatgacaattattctaatttgcatctttgg
tcaattacaaatattagtggtgttacaagcaaggattttgtcaatttccccctggctatc
gaggaaccggatattcctgacccaaccctcgaggaaaataagattggtatcgatgataat
gttccattatcatgtattggaatgccatattataaggatttgttgttatctaattacgca
tcagatttgaaatttgtcaaggaatttgctcgagcacctgaaggcatcaatgctgattta
cttcttgaatcggagagaaatggaggtaggttcatgctttatgataaggctaaatatgga
ccggggaatatcgtgaagaagtttgatattgtcgaggggaaaactgctatcaagaacaag
tctcaaataccaaagtttataagtgaaaggaatggcaatggtgcagaaaagaatggaact
gaagaaattccaggcattgcttctgagattattgatgagtcaatctttcaatataagagt
tccaatctgtctgttattcccaattgttattcgcgcttacaaattcaatattctcgtttc
ggtgttcgagattttgattttgaattctacaataaaacaaatggattgtattgtggattg
gaaaaccacactgacaattcatacattaactcattgttacaactatatcgttttctgcct
gtgttttataacaagattgtcaaaaacttgttgaatgaatggttgccctgtgatcttgat
acgattttggttaatacagagggttcatctatcttgactgaattgggatatttgtttgac
atgatggataaggctaaggggaataatgttaagatttacaactttgctcaagttgtgaca
cacaacaaagatgcaattgcccatcacctcattaatcttgacgaaatgaaccatttgaat
tctttagacgttcgaaacttgattatttcatttaataagtttttgctcagtcaaatcaac
agtgatttacacgtacaatcgcaggattctattgaggaaattatgaaattaacatatatg
gttgaagttagaggcaatgaaagcacttgtcccgtgtatgacaagagttatggatctata
ctttcattggatttagttacacctccaagtaacatgcttaacaaaatgagtatcttgatt
aaccctcatcttaatactaccgcagcccagcaaccaccccaattggccaatatccgtcgt
aatgtgaacattttaacatatttggaatactccatgaatcaagtgaaactcgtaccatgt
caacaacaccagcatgcatatccacatagccttgaaataaaaaccactattactagttta
cctccagttttggtacttaatgtgaatctttccaatgaagagtttcaattgataaatggg
tttagaaagtggataatccccgagttctacgcggtaaaccagaaggataagtttagtttc
aagtcaatgattagtccatttgacaaggccaatagtgccaaatatgacttgttgggattt
gtatgtgagataagccatctgtctgactttgccttgggcatgcatgggttggtcacattt
gtgaagttagaccaatggtatttgtttaatgatttcttggttatgcctataccagaggaa
gaagtgcttgatttatcttctccgtggaagaaaccggttgttgtcatatatcaagaatca
tctattgcccaaactccatttgaatatttcaatatagagacatttggcaagttacctaac
ttgaacgattctatcctttatcgggatcattttgcgggaactattagggaaggctacaaa
aaagagtatgagttgttgacgaagcaagaagcacctaaggcagatacacttgttgccatt
gatgctgaatttgtgttattgaatcccgaactattggaagtgcattatgacgggtttaag
aaattgatcaaacccaagatactttcattggcaagagtgtcggtattgcgaggtgaagaa
gaaactgcgttcattgatgattatgtcgttcacacagccaagatccacgattatttgaca
agtttctctgggattgaagatctggacttggaccctattaggtcggctaaaaatttggtc
actttacaaaccgcataccgtaagctttggttattgttgaatttaggagttgtgtttgtt
ggccatgggttgtacaatgatttccgttgtattaatttacaagttcctaaaaagcaaata
cgggacactgctgagttttattacaagagcgatttcaaacgacaattgggtcttaagttt
ttggcatatgtgttgttgaaagagaaggtgcagagtaataatcatgattccattgaagac
gcctacactgcattgatgttgtataagaagtatttggagttaacttcccaaggcatgttt
gaatctaccttgaatttcatctattctgaagggcaacagatgagatttagagttccagaa
gacaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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