KEGG   Sphingomonas panacis: AWL63_21055
Entry
AWL63_21055       CDS       T04760                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
span  Sphingomonas panacis
Pathway
span03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:span00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AWL63_21055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:span03021]
    AWL63_21055
   03400 DNA repair and recombination proteins [BR:span03400]
    AWL63_21055
Enzymes [BR:span01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AWL63_21055
Transcription machinery [BR:span03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AWL63_21055
DNA repair and recombination proteins [BR:span03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AWL63_21055
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RelB B MYO10_CC
Other DBs
NCBI-ProteinID: AOH86075
UniProt: A0A1B3ZF71
Position
4604537..4608691
AA seq 1384 aa
MATRAIEGGTAKRRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSDPSIGYVSGLEKTLR
SVFPIRDFAGTAELDFVNYELEPPKFDTDECRQRGITYAAPMRVTLRLIVFEVDADTEAR
SVLDIKEQDVYMGDMPLMTQNGTFIINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLF
AARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLTSEEILNYFYNRVTFVR
GQGGWIVPYQAENWRGQKPMFDIVDAKTGEVVFASGQKISPRAANKAAKDGLTDLLIPTE
EIFGRYSAYDLINEQTGQIYIEAGDEVSAENLELLDKAGIDRIELLDIDHVTTGPWIRNT
LKADKAEEREQALSDIYRVMRPGEPPTLETAESLFSGLFFDPDRYDLSAVGRVKLNMRLD
LDVEDTVTTLRTEDILEVVKTLVGLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGLLR
MERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGFIETP
YRKVIDHKVTDDVVYLSAMEEAKHTIAQANAELDSEGHFTEELVSSRQAGEFLMAIPTNI
TLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTGMEETVAR
DSGAAIAAKRSGIVDQVDATRIVIRATGEVEAGQSGVDIYTLMKFQRSNQNTCINQRPLV
KVGEVVNIGDVIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIVKDDVFTSI
HIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILAGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAIERE
EIERLKKDSDDERSILNRATWSRLREMLIGQTATAVPKNGPRKGVVIDQDVLDSVDRHEW
WKFAVADDKTQSDLEAVKVQYDDAVKVIVDKFQDRRDKLERGDELPPGVLKMVKVFVAVK
RKLQPGDKMAGRHGNKGVISRILPAEDMPFLADGTPVDIVLNPLGVPSRMNVGQIFETHL
GWAARNLGQQIYTALEDWREANPEAEGGEMPNAVKDRMLEVYGEHYEADIKARTPEQIIE
LAENLKTGVPMGTPVFDGAREKDVSAMLSLAGLDTSGQSDLFDGRTGDKFDRKVTVGIIY
MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEML
TVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKTVEEFDTDGVA
IAAE
NT seq 4155 nt   +upstreamnt  +downstreamnt
atggcaaccagagcgatcgaaggcggcaccgcgaagcgccgcatccgcaaggtgttcggc
aacatccacgaagtcgtgcagatgccgaacctgatcgaggtgcagcgcgagagctacgaa
cagttcctccgctcagatccctcgatcggttatgtttccggcctcgaaaagacgctgcgt
tcggtgttcccgatccgcgatttcgccggcaccgccgagctcgatttcgtcaattacgaa
ctcgaaccgccgaagttcgacaccgacgagtgccgccagcgcggcatcacctatgcggcg
ccgatgcgcgttacgctgcgcctgatcgtgttcgaagtggacgccgataccgaagcccgc
tcggtgctcgatatcaaggagcaggacgtgtacatgggcgacatgccgctcatgacgcag
aacggcacgttcatcatcaacggcaccgagcgcgtgatcgtctcgcagatgcaccgctcg
ccgggcgtgctgttcgatcatgatcgcggcaagacccacgcgtcgggcaagtatctcttc
gccgcgcgcgtcatcccatatcgcgggtcgtggctcgatttcgagttcgacgccaaggac
atcgtcaacgtccgtatcgatcgcaagcgcaagctgccggtcacggcgctgctgtatgcg
ctcggcctcacctccgaggaaatcctcaactatttctacaaccgcgtcaccttcgtgcgc
ggtcagggcggctggatcgtcccctatcaggccgagaactggcgcggccagaagccgatg
ttcgacatcgtcgacgccaagaccggcgaagtcgtgttcgccagcggccagaagatcagc
ccccgcgccgccaacaaggcggccaaggatggtctcaccgatctgctgatcccgaccgag
gaaatcttcggccgctactcggcctatgatctcatcaacgagcaaaccggccagatctat
atcgaggcgggcgacgaagtttcggccgagaacctcgaactgctcgacaaggccggcatc
gaccggatcgagctgctcgacatcgatcacgtcaccaccggcccgtggattcgcaacacg
ctcaaggccgacaaggccgaagagcgcgagcaggcgttgtccgacatctaccgcgtcatg
cgccccggcgagccgcccacgctcgaaactgcggagtcgctgttctccggcctgttcttc
gatcccgatcgctacgatctgtcggcggtcggccgcgtcaagctcaacatgcgcctcgat
ctcgacgtcgaggacaccgtaaccacgctgcgcaccgaggatatcctcgaagtcgtcaag
acgcttgtcggcctcaaggacggcaagggcgagatcgacgacatcgacaacctcggcaac
cgccgcgtgcggtctgtcggcgagctgctcgagaaccagtaccgcgtcggcctgctccgc
atggagcgcgccgtgaaggagcgcatgtcctcggtcgacgtgtcgaccgtgatgccgaac
gacctcatcaacgccaagcccgccgtggctgccgttcgcgagttcttcggctcctcgcag
ctctcgcagttcatggatcagaccaacccgctctccgaagtgacgcacaagcgtcgcgtt
tcggcactcgggccgggcggtctgacgcgtgagcgcgccggcttcgaagtccgcgacgtt
cacccgacccattatggccgtatctgcccgatcgagacgccggaaggcccgaacatcggc
ctcatcaacagcctcgcctcgttcagccgcgtcaacaaatacggcttcatcgagacgccg
taccgcaaggtcatcgaccataaggtgaccgacgacgtcgtctatctgtcggcgatggaa
gaggccaagcacacgatcgcgcaggccaacgccgagctcgacagcgaagggcatttcacc
gaggaactggtctcgtcgcgtcaggcgggcgaattcctgatggcgatcccgaccaacatc
acgctgatggacgtcagccccaagcagctcgtctcggtcgccgcatcgctcattccgttc
ctggaaaacgatgacgccaaccgcgcgctgatgggctcgaacatgcagcgccaggccgtt
ccgctggtgaaggcggaagcgcctttcgtcggcaccggcatggaagagaccgtcgcacgg
gattcgggcgcggcgatcgccgccaagcgttcgggcatcgtcgatcaggtcgatgcgacc
cgtatcgtcatccgcgcgacgggtgaggtcgaggccggccagtcgggcgtcgacatctac
acgctgatgaagttccagcgctcgaaccagaacacctgcatcaaccagcgtccgctggtg
aaggtcggtgaggtcgtgaacatcggcgacgtgatcgccgacggtccctcgaccgagttc
ggtgagctggcgctgggccgcaacgcgctcgtcgcgttcatgccctggaacggctacaat
tatgaggattcgatcctcatttccgagcgtatcgtgaaggatgacgtcttcacctcgatc
cacatcgaggagttcgaggtcatggcgcgcgacaccaagctcgggccggaagacatcacg
cgcgacatccccaacgtcggcgaggaagcgcttcgcaacctcgacgaagctggcatcgtg
tacatcggcgccgaggtcgagccgggcgatatcctcgccggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagagaagctgctccgcgcgatcttcggtgaaaaggccagc
gacgtgcgcgacacctcgttgcgtctgccgccgggcgtcgccggcaccgtcgtcgaggtc
cgggtgttcaaccgccacggcatcgacaaggacgagcgcgcgatggcgatcgagcgcgag
gagatcgagcgtctcaagaaggactcggacgacgagcgcagcatcctcaaccgcgcgacc
tggtcgcgtctgcgcgagatgctgatcggccagaccgcgaccgccgttcccaagaacggc
ccgcgcaagggcgtcgtcatcgatcaggacgtgctcgacagcgtcgatcgtcatgaatgg
tggaagttcgccgtcgccgacgacaagacccagagcgatctggaagcggtcaaggtgcag
tatgacgatgccgtcaaggtgatcgtggacaagttccaggatcgccgtgacaagctcgag
cgtggcgacgaactgccgcccggcgtgctcaagatggtcaaggtgttcgtcgcggtgaag
cgcaagcttcagccgggcgacaagatggccggccgtcacggcaacaagggcgtcatctcg
cgcatcctgccggcggaggacatgccgttcctcgccgacggtacgccggtcgatatcgtg
ctcaacccgctgggcgtgccgagccgcatgaacgtcggtcagatcttcgagacgcatctc
ggctgggccgcgcgcaatctcggccagcagatctacaccgcgcttgaggattggcgtgag
gccaaccccgaggccgagggcggcgagatgccgaacgcggtcaaggatcggatgctcgaa
gtctacggcgagcattacgaggcggacatcaaggcgcgcacccccgagcagatcatcgag
ctggcggaaaacctgaagaccggcgtgccgatgggcacccccgtgttcgacggcgcccgc
gagaaggacgtgtcggcgatgctgtcgctggcgggtctcgacacctcgggccagtcggat
ctgttcgacggacgtaccggcgacaagttcgatcgcaaggtgacggtgggcatcatctac
atgctcaagcttcaccatctggtcgacgacaagatccacgcccggtcgatcgggccgtac
agcctcgtcacccagcagccgctgggcggtaaggcgcagttcggcggccagcgcttcggc
gagatggaggtctgggcgctccaggcctacggcgcggcgtataccttgcaggaaatgctg
acggtgaagtcggacgacgtggtcggccgcaccaaggtctatgaggcgatcgtcaagggt
gacgacacgttcgaggccggcatcccggagagcttcaacgttctcgtcaaggaaatgcgc
tcgctgggcctgaacgtcgagctgaagacggtcgaggagttcgacaccgacggcgtcgcg
atcgcggcggagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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