KEGG   Streptomyces parvulus: Spa2297_19270
Entry
Spa2297_19270     CDS       T04685                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
spav  Streptomyces parvulus
Pathway
spav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Spa2297_19270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spav03019]
    Spa2297_19270
   03400 DNA repair and recombination proteins [BR:spav03400]
    Spa2297_19270
Enzymes [BR:spav01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Spa2297_19270
Messenger RNA biogenesis [BR:spav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Spa2297_19270
DNA repair and recombination proteins [BR:spav03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Spa2297_19270
SSDB
Motif
Pfam: RQC HRDC DEAD Helicase_C RecQ_Zn_bind ResIII
Other DBs
NCBI-ProteinID: ANJ11586
UniProt: A0A191V984
Position
4231973..4233970
AA seq 665 aa
MGGTGVIGEMAEAAVTGAGDGGRSEALATLHRVFGYESFRGEQEEVVDHVVAGGDAVVLM
PTGAGKSLCYQIPALVRPGTGIVVSPLIALMQDQVDALRALGVRAGFMNSTQDFDERRVV
EAEFLAGELDLLYLAPERLRLQGTLDLLSRGKISLFAIDEAHCVSQWGHDFRPDYLALSL
LGEHWPEVPRLALTATATHATHRELTERLNMPTARHFVASFDRPNIQYRIVPKTDPRKQL
LHFLREEHAGDAGIVYCLSRNSVEKTAEFLSRNGVEAVPYHAGLDAGTRAAHQSRFLREE
GLVVVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWMAYGLNDVV
QQRKLIQSGEGDEAFRRRAQSHLDSMLALCETVRCRRGQLLAYFGQEPDPAGCGNCDTCL
TPPETWDGTVAAQKVLSTVVRLKRERGQKFGAGQIIDILLGKRTAKVIQFDHDQLSVFGI
GEDLAESEWRGVARQLLAQGLLAVEGEYGTLVLTDDSGAVLRREREVPLRKEPKKPASAR
GTGTRGERKAKAAVAELPEELQPAFEALRAWRAERAREQGVPAYVIFHDATLREIATVWP
TSVAQLGGISGVGEKKLATYGEGVVAVLAGLSGAAQAAPAPGGDAGDGPDDWPDTEPDPE
PEDWI
NT seq 1998 nt   +upstreamnt  +downstreamnt
atgggcgggacgggtgtgatcggcgagatggcagaggcggcagtgaccggggccggggac
ggcgggcgcagcgaggcgctggccacgctgcaccgggtcttcgggtacgaatcgttccgc
ggcgagcaggaagaggtcgtcgaccacgtggtggcgggcggcgacgccgtcgtgctcatg
cccaccggcgccggcaagtcgctgtgctaccagattccggccctggtcaggcccggcacc
ggcatcgtggtctcgccgctcatcgcgctcatgcaggaccaggtggacgcgctgcgggcc
ctgggcgtgcgggccggcttcatgaactccacgcaggacttcgacgagcggcgcgtggtg
gaggccgagttcctcgccggcgagctggacctgctctacctggcccccgagcggctgcgc
ctccagggcaccctcgacctgctctcccgcggcaagatctcgctgttcgccatcgacgag
gcgcactgcgtctcgcagtggggccacgacttccgccccgactacctcgccctgtcgctg
ctcggcgagcactggccggaggtcccgcggctcgcgctgacggcgacggccacccacgcc
acccaccgcgagctgaccgagcggctgaacatgccgacggcgcggcacttcgtggccagc
ttcgaccgccccaacatccagtaccggatcgtgccgaagacggaccccaggaagcagctg
ctgcacttcctgcgcgaggagcacgcgggcgacgcgggcatcgtgtactgcctctcgcgc
aactcggtcgagaagaccgccgagttcctctcccgcaacggtgtggaggcggtgccgtac
cacgcgggcctcgacgccggcacccgcgccgcccaccagtcccgcttcctgcgggaggag
ggcctggtggtggtggcgaccatcgccttcggcatgggcatcgacaagcccgacgtccgc
ttcgtcgcccacctcgacctgccgaagtcggtcgaggggtactaccaggagaccggccgc
gccggccgcgacggactcccgtcgacggcgtggatggcgtacgggctcaacgacgtcgtg
cagcagcgcaagctgatccagtcgggggagggcgacgaggccttccgccgccgggcccag
tcccacctggactccatgctcgcgctgtgcgagaccgtccgctgccgccgcggccagctc
ctcgcctacttcggccaggagccggacccggccggctgcgggaactgcgacacctgcctc
accccgccggagacctgggacggcacggtcgcggcgcagaaggtgctgtccacggtggtg
cggctgaagcgggagcgcgggcagaagttcggcgccgggcagatcatcgacatcctgctg
ggcaagcgcaccgccaaggtcatccagttcgaccacgaccagctctccgtgttcggcatc
ggcgaggacctcgccgagagcgagtggcggggcgtcgcccggcagctgctcgcccagggc
ctcctcgccgtcgagggggagtacggcacgctggtgctgaccgacgacagcggggcggtg
ctgcgccgggagcgggaggtgccgctgcgcaaggagcccaagaagccggcgtccgcgcgc
gggacgggcacgcgcggcgagcgcaaggccaaggccgcggtggccgagctgcccgaggaa
ctgcagccggcgttcgaggcactgcgcgcctggcgtgccgagcgcgcccgcgagcagggc
gtcccggcctacgtgatcttccacgacgcgacgctcagggagatcgccacggtgtggccc
acctccgtcgcgcagctcggcggtatcagcggcgtcggtgagaagaagctcgcgacctac
ggggagggggtcgtcgccgtcctggccggactgtcgggtgcggcccaggcggctcccgcc
ccgggcggcgacgccggggacggcccggacgactggcccgacaccgagcccgacccggag
cccgaggactggatatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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