KEGG   Shewanella putrefaciens CN-32: Sputcn32_3765
Entry
Sputcn32_3765     CDS       T00513                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
spc  Shewanella putrefaciens CN-32
Pathway
spc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:spc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Sputcn32_3765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spc03021]
    Sputcn32_3765
   03400 DNA repair and recombination proteins [BR:spc03400]
    Sputcn32_3765
Enzymes [BR:spc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Sputcn32_3765
Transcription machinery [BR:spc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Sputcn32_3765
DNA repair and recombination proteins [BR:spc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Sputcn32_3765
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: ABP77472
UniProt: A4YBY9
Position
complement(4366769..4370986)
AA seq 1405 aa
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLAKEIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFMSVAEVEKAYATG
AAELHARVKVRITETIIGDDGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKHVTNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEAAVEAGDIIANW
DPHTHPIISEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGTAGKEMRPMIRL
LGANGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGDQYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDTEFLEGEQVEVSRVKIANRELIAQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKVTASEAEQNLADLLNMAGSQD
NT seq 4218 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaaacgtctgaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtcacccagactaaagtacgtcgtgag
cgtatgggtcacatcgaactggctagcccagtcgcgcacatttggttcttaaaatcactg
ccgtcccgtatcggtttaatgctcgatatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatcattcgtcgtgatcgagcctggcatgaccagccttgaacgtggtcaaatgctg
acagaagaaacgtatctggatgcgttagaagaatacggtgatgagttcgaagcgaaaatg
ggtgccgaagctgttctagaactgctgcgcgctatcgatttagcgaaagaaatcgaacaa
atgcgtgaagaattaccttcaatcaactctgagactcgtcgcaagaaagtgactaaacgt
cttaagttgatggaagccttcttcacttcaggcaacaagcctgaatggatgatcttaaaa
gtactgcctgtgttaccgcctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatcttaacgacctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccagacattatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgcaattaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttgttgggtaaacgcgttgactattctggtcgttcggtcattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaaaccattt
atctatggcaagctggaaggtcgtggcttagcgactaccatcaaagcggctaagaagatg
gttgagcgtgaagtggcggaagtttgggacgttctggatgaagtgatccgcgaacatcca
gtaatgcttaaccgtgcaccaacactgcacagattaggtattcaagcgttcgaacctgta
ctgattgaaggtaaagccatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagccaacggcgagcctgttatc
accccgtctcaagacgtggtattgggtctgtactacaccagccgtgagcgtattaacggc
cgtggtgaaggtatggcatttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgttaaagttcgtatcactgaaaccattattggtgatgat
ggtgagcgcactgaacaacgccgtatcgttgatacgactgtgggtcgtgctctgctgtca
cttattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atctctaaactgttgaacacctgttatcgtcaactgggtctgaaagatactgttatcttc
gctgaccaattgatgtataccggtttccgttttgcaaccatctctggtgcctctgtcggt
atcgatgacatggttattccagacgagaaatacaccttagttgctgatgcagaagctgaa
gttcttgaaattcaagagcagttccaatctggtctagtcacagccggtgagcgttacaac
aaagttatcgatatctgggcaagtgccaacgaaaaagtttctaaagctatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgttgaagagaaacaagcctcgtttaac
agcatctatatgatggctgactcaggcgctcgtggtagtgctgcacagatccgtcagttg
gcgggtatgcgtggtctgatggcgaaacctgacggctcaatcatcgaaacgccaattacc
gctaacttccgtgaaggtctaaacgtactccagtactttatttctactcacggtgcgcgt
aaaggtcttgccgatactgcattgaaaacagcgaactcgggttacctgactcgtcgtctt
gtagacgttgcacaagatttagtggttatcgaagacgattgtggtactcacgaaggtcta
accatgaaaccgctgattgaaggtggtgatgtggttgagccgttacgtgaacgcgtactg
ggtcgtgtggttgccgttgatgtgttctatccaggcaccgaagatgtactagcaccacgt
aacacgctgctcgatgaagcatggtgtgacaagttagaagagcattcaatcgatgaagtg
attgtgcgttctgtgattacctgtgataccgatttcggtgtctgtgcagcctgttatgga
cgtgacttggcccgtggtcatatcatcaaccatggtgaggccatcggtgttgtggcagca
caatctatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcgtctgcagaaaacaatgtccaagtgaaaaactcgggttcattgaaactg
cataatgctaagcatgttactaacagcgacggcaaactggttatcgtttctcgttcttct
gagctggccatcatcgatgagttaggtcgtgagaaagagcgttacaaagtgccatacggt
actgtgcttgagaaattggaagaagctgcggttgaagcgggcgatattatcgctaactgg
gatccacatactcacccaatcatttctgaagtggcgggtagtatcaagttcgtcgatatg
attgacggtgtcactatgacacgtcaaacagacgaactaacgggtctatcatcaatcgtg
atccttgacgtcggtcagcgtggtacagcgggtaaagaaatgcgcccaatgatccgtctg
cttggcgctaatggtagcgatctgatgatccctggtacagaagtgccagcacagtacttc
ttacctggtagtgcgattgttaaccttgacgacaacgcgcaaattgccgtaggtgacgct
ttagcacgtattccacaggaatcgtctaaaacacgcgacatcaccggtggtctgccacgc
gttgctgacctgttcgaagcgcgtaagccaaaagaacctgctattctggcagaaatctct
ggtaccatctcgtttggtaaagagaccaaaggtaagcgtcgtttggtcattacacctgct
gatggcggcgatcaatatgaagagatgatccctaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttatcgctgacggtccagaagcggcacatgacatt
ctgcgtctgcgcggtatccacaatgtagcaaactacattgtgaacgaagttcaagacgtt
taccgtctgcaaggcgtgaagatcaacgataagcatatcgaagtcatcatccgtcaaatg
ctacgtaagtgcttgatcacttctgcgggtgacacagagttcttagaaggtgagcaagtt
gaagtgtctcgcgttaagatcgcaaaccgcgaacttatcgcacagggtaaagtacctgcg
accttcgaacgtgaactgctaggtattactaaagcgtctctggcaacagaatcgtttatc
tctgcagcgtcgttccaagaaactacgcgcgtactgactgaagccgccgtaggtggtaag
agtgatcaactacgtggtctgaaagaaaacgttatcgttggtcgtttgatcccagccggt
acaggttatgcttatcacaagacccgcaatgatgctcgcgctaagaaagacgagccagtt
gttgtgaataaagtcactgctagtgaagctgaacagaacctcgctgatctcttaaacatg
gccggtagccaagattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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