KEGG   Solanum pennellii: 107003578
Entry
107003578         CDS       T04130                                 
Name
(RefSeq) probable rhamnogalacturonate lyase B
  KO
K18195  rhamnogalacturonan endolyase [EC:4.2.2.23]
Organism
spen  Solanum pennellii
Brite
KEGG Orthology (KO) [BR:spen00001]
 09190 Not Included in Pathway or Brite
  09191 Unclassified: metabolism
   99980 Enzymes with EC numbers
    107003578
Enzymes [BR:spen01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.2  Acting on polysaccharides
    4.2.2.23  rhamnogalacturonan endolyase
     107003578
SSDB
Motif
Pfam: Rhamnogal_lyase CBM-like fn3_3 RhgB_N EMC7_beta-sandw CarboxypepD_reg CarbopepD_reg_2
Other DBs
NCBI-GeneID: 107003578
NCBI-ProteinID: XP_015057396
Position
11:4398318..4404222
AA seq 668 aa
MGRYKQLSVHVLEVTMVPLLFFLVADCHPHNGQRSTITSALKLDIQPKHVTMSNEIFNIT
LSKPHGDVTGISYGGVQNLLSTHNVETNRGYWDIIWNNTGPNTTRAKLSGTSFEVIINNE
NQTEISFKRTWNASQSNEPPLNIDKRFIILRNTSGFYTYSIVERLKGWPISYIQNLRLVF
KLQENMFHYMAVSDERQRVMPTSMDRKKGQVLDYKEAVHLTNSTNPDLNGEVDDKYFYAS
DNKDGKVYGWVSSTNPPLGFWMINPSNEYRTGGPFRQDLTTHIGPTVLSIFVSTHYAGED
LAIKFGQGEPWKKVIGPVFVYLNSNAAAKENPSMLWNDAKTRMNQEATSWPYEFPVSEDY
IKSNQRGTVSGKLFVNDSFISKHIVPASNAYIGLAPLGEAGSWQRENKGYQFWTKTHDNG
NFTIKKVISGTYNLYATIPGVLGDYKYTSIVDVTSGSNIKLGDLLYNPPRNGVTIWEIGV
PDRTAAEFFIPNPPPQFKVHKYKNNSESRFRQYGLWKQYSVLYPKTDLVYNVETSNYSRD
WFYAHVTRKIGNNKYKATTWKIIFNLANVSNASNYTLQLAIAAASQAELQVRINYENAEK
PHFTTGLIGGSNAIARHGIHGLYWIYSIGIQGKLLVNGANTIFLSQILALSPFQGVMYDY
LRFEGPHQ
NT seq 2007 nt   +upstreamnt  +downstreamnt
atggggagatataagcaattaagtgtacatgtgttggaggtgactatggttcctttgttg
ttcttccttgttgctgattgtcatcctcacaatgggcaaagatcgacaataacatcagca
ctcaaattggacatacaacctaaacatgtcacgatgagcaatgaaatttttaatataact
ttatcaaaaccacatggtgatgtcactggcatatcatatggtggggtccaaaatctacta
tccacccacaatgtagaaaccaatagagggtattgggatattatttggaataacaccgga
cctaatactactcgagcaaagctttcaggaacaagttttgaggtaataattaataatgaa
aatcagacagaaatttcatttaaaagaacatggaatgcttctcaatcaaatgaacctccc
ctaaacattgataaaagatttataatactacgcaatacatctggattttatacgtattca
atcgttgaacgtttaaaaggatggccaatttcgtatatacaaaatctcaggctggtgttc
aagcttcaagaaaacatgtttcattatatggctgtttctgatgagaggcaacgtgtcatg
ccaacatcaatggatcgaaagaagggtcaagttcttgactataaagaagctgttcatctc
actaattcgactaatccagatttaaatggagaggtggatgacaagtatttctatgcaagt
gataataaagatggtaaagtttatggatgggttagttctactaatccaccattaggattt
tggatgattaatccaagtaatgaatatcgtactggaggaccttttagacaagaccttaca
acacatattggtccaactgtacttagtatatttgtgagtacacattatgctggagaggat
ttagcaattaaatttggacaaggagaaccatggaaaaaagttattggtcctgtttttgtg
tatttaaattcaaatgctgcagctaaggaaaatccttctatgctgtggaatgatgctaag
acaagaatgaatcaagaagctacaagttggccttatgaatttccagtttcagaagattac
atcaaatctaatcaaagaggaactgttagtggcaagctatttgttaatgacagttttatc
agtaaacatattgtgccagcatccaatgcttatataggattagcaccactaggagaagct
ggatcttggcaaagagaaaacaaaggttatcaattttggacaaaaactcacgataatgga
aatttcactataaaaaaggtcatatccggtacatataatttgtatgcaacaattccagga
gttcttggagattacaaatacacttcaattgtagatgttacttcaggttcaaatattaaa
ttaggtgatttattgtataatcctccaagaaatggagttacaatttgggaaattggtgta
ccagatagaactgctgctgaattttttattccaaatccacctccacaattcaaagttcac
aaatacaaaaataattctgaatcaagatttagacaatatggtttgtggaaacaatatagt
gttttgtatcctaaaactgatcttgtctacaatgttgagactagcaactactcaagagat
tggttttatgctcatgttacaaggaaaattggaaacaataaatataaagctactacatgg
aaaattatatttaatcttgccaatgttagtaatgcttcaaattacactctccaattggct
attgctgcagcttcacaagctgaacttcaagttcgtatcaactatgaaaatgcggaaaaa
cctcattttacaacaggacttatagggggaagtaatgcaattgcaagacatggaattcat
ggattatattggatttatagcattggaatacaaggcaaattgcttgtcaatggagcaaac
acaatttttctttcacaaatattggctcttagcccatttcaaggtgtaatgtatgattat
cttcgttttgaaggacctcatcagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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