KEGG   Solanum pennellii: 107007914
Entry
107007914         CDS       T04130                                 
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
  KO
K14328  regulator of nonsense transcripts 3
Organism
spen  Solanum pennellii
Pathway
spen03013  Nucleocytoplasmic transport
spen03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    107007914
   03015 mRNA surveillance pathway
    107007914
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107007914
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     107007914
   mRNA cycle factors
    P-body specific factors
     107007914
SSDB
Motif
Pfam: Smg4_UPF3 RRM_2
Other DBs
NCBI-GeneID: 107007914
NCBI-ProteinID: XP_015062249
Position
1:102563114..102575346
AA seq 485 aa
MKGPLDRSKVVLRHLPPTISQSMLLDQVDSRFAGRYNWFCFLPGKSSQKHQTYSRAYIEF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPQHWSKKDGREGTILKDPEYLE
FLEFISKPIENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARKSIANG
RPTRRASGTSAGSPSSSASKRSSEKRRASTSMYVLRDSSKAGSGKDKTYILAPKRDDQQR
AEKSGTSAPVSVANAVEEETGGAADVGKKKILLLKEKEKENPNNQRREASGRIIRSILLK
DARQNQVPSASQQEKHRVDKDKKPPRPPSVQLFHRETNGANEDRVLGADLHVVHTEKQEK
RTRIRDRPDRGVWTPLRRSDSLHASDESLSSSASQSSEVPDFVEGSPGETKHGLINARGA
EFRPMGSGRNSHSSFDNGTYKHGGRRGMRDDGISVGEGKPLRRGGPSSYNTHEKQVWVQK
SSSGT
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgaaggggccgttagatcgatcaaaagtagtgctgcggcacttgccgccgacaatttct
cagtccatgcttcttgaccaagttgattcccgattcgctggtcgatacaactggttctgt
tttctacccggcaagtccagtcagaagcatcaaacttattcaagagcctatattgaattt
aagaggccagaagatgttatcgagtttgcagagttctttgatggacacgtttttgtaaac
gagaaaggcactcagttcaaaactattgtcgagtatgctccttcacagcgtgttccacaa
cactggtccaagaaggatggccgtgaaggaaccatcttgaaagatcctgaatatctggag
ttccttgaatttatctcgaaacctattgagaatcttccgagtgcagaaatacagttggaa
agaaaggaagctgaacgcgcgggttctgcaaaggatgctcctatagttactccattgatg
gattacatacgtcagaaaagagccgccaagagtggagctcggaaatctatagctaatggg
agaccaaccagaagagcgagtggcacatccgcaggaagtcctagctcaagtgcgtctaaa
cgaagctctgaaaagagacgggcttccactagcatgtatgttcttcgagatagttctaag
gctgggagtggcaaagacaaaacatatattctagctccaaaacgtgatgatcagcagcgt
gctgagaagtctggtacctctgctcctgtatctgtggctaatgcagttgaagaggaaact
ggtggagctgctgatgttggcaagaagaaaatcctgctcttgaaggaaaaggaaaaagaa
aatcctaataaccagcgtcgtgaggcaagtggaagaatcattagaagtattcttctcaag
gatgctcgtcaaaatcaggtcccatctgcatcccaacaagaaaaacacagggtggataag
gacaaaaagcctcctaggccaccaagtgtccagttgtttcatagagaaactaatggagct
aatgaagatagggttcttggagctgatttgcatgttgtccacactgagaaacaggaaaaa
cgcactaggatcagggataggccggatcgtggtgtttggactcctcttcgtcgttctgat
agtttacatgctagtgatgaatctttatcttcatctgcctctcaatcttccgaagtgcca
gattttgttgaaggaagtccaggtgaaaccaaacatggtctgataaatgctcgtggtgcg
gagttcagacccatgggaagtgggcgtaattctcattcttcttttgataatggtacttat
aaacatggtggtcgtcgtggtatgagggacgatggaatttcagtaggggaaggaaagccc
ttaagaaggggaggtccttctagctataatacccatgagaaacaagtgtgggtccaaaag
tcaagttctggtacttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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