KEGG   Solanum pennellii: 107021236
Entry
107021236         CDS       T04130                                 
Name
(RefSeq) exosome complex component RRP43-like
  KO
K12586  exosome complex component RRP43
Organism
spen  Solanum pennellii
Pathway
spen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107021236
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107021236
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     107021236
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 107021236
NCBI-ProteinID: XP_015077338
Position
6:complement(57658936..57665758)
AA seq 312 aa
MAAANGSSDLYSEMEVDAFRRLFPLRYHEQHLLKSVRPDARKLGSARDTTLALGAVASAE
GSALAKIGSTTMLAAIKMEIMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVIS
KQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIYCLDADGSLFDAALLSAVAAFSHLNIP
VVSLNEDGRIVLVSEDNIQLKLEKQPVNTEKRKLKLNSPPFSLTCLLHKNYILADPTAEE
ESIMETAVTVVLDSSYQLVSLYKPGGPVHAHTSVIQDCVALAKRRVKELQSVLNEAISDM
EVERSRLSLHHT
NT seq 939 nt   +upstreamnt  +downstreamnt
atggctgctgccaatggctcaagtgacttgtattcagagatggaggtggacgcatttaga
cgtcttttccctttgcgctatcatgagcagcatcttctcaaatcggtccgacctgatgct
cgaaagcttggaagtgctagagatacaacacttgcacttggtgccgtggcctctgctgag
ggatcagcactggcaaagattggctccactacgatgctggccgccatcaaaatggaaatc
atgacaccaactgttgaatgtccagatgagggatccatagctatcgaatttcacatgcct
cccatttgttctccccttgtacggcctggtaggcctgcagaggcagcatcagtaatttct
aagcagctgtcagacactatcttgagttctggcatgattgacttgaaagagttgtgcttg
gttggaggaaaagctgcatggatggcctacctggacatatactgtttggatgctgacggt
tctctgtttgacgctgcattactatctgcagttgctgccttttcgcatttgaacattcca
gtagtgtctttgaatgaagatgggcgaatagttcttgtctctgaggacaatatccagttg
aaattggagaagcagcctgtcaatacagagaaaagaaaactaaaattgaactctccacca
ttctccttaacgtgcttacttcacaagaactacatcctagcagatcctacagcagaggaa
gaatctataatggaaacggctgtaactgtggtattggattcgtcctaccagcttgtttca
ctttataaaccagggggaccagttcatgcccatacatcagtcatccaggattgtgtcgca
ctggcaaaacgcagagtgaaagagcttcagagcgtcttaaatgaagctatttctgatatg
gaggttgagcgaagtagattatccttgcaccatacttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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