KEGG   Solanum pennellii: 107021391
Entry
107021391         CDS       T04130                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
spen  Solanum pennellii
Pathway
spen03018  RNA degradation
spen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107021391
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107021391
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107021391
   03041 Spliceosome [BR:spen03041]
    107021391
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107021391
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107021391
Spliceosome [BR:spen03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107021391
 Complex C
  U2 snRNP components
    107021391
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C LSM14
Other DBs
NCBI-GeneID: 107021391
NCBI-ProteinID: XP_015077526
Position
6:complement(60534273..60537829)
AA seq 93 aa
MLFFSYFKDMVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDEDKYPHMRSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttctcatacttcaaggacatggtgggcagagaagtgacagtggaactgaag
aatgatttggctatccgaggtacactccattcagtcgatcagtatctcaacattaagctc
gaaaacacaagggtcgttgatgaagacaagtaccctcacatgcgttcggtgaggaactgc
ttcatcagaggatcagtggtgagatacgtccagttacctccagacggagtcgacatagag
ctgcttcatgatgctacgaggagagaagctcgtggtggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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