KEGG   Solanum pennellii: 107028501
Entry
107028501         CDS       T04130                                 
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE-like isoform X1
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
spen  Solanum pennellii
Pathway
spen03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107028501
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:spen03036]
    107028501
Chromosome and associated proteins [BR:spen03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107028501
  Chromatin remodeling factors
   NuRD complex
    107028501
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like DUF1087 Helicase_C Chromo ResIII HDA2-3 PHD CHDCT2 PHD_4 DEAD Myb_DNA-binding zf-HC5HC2H C1_2 PHD_2 C1_1
Other DBs
NCBI-GeneID: 107028501
NCBI-ProteinID: XP_015085070
Position
8:23420717..23477496
AA seq 1463 aa
MASLVERLRVRSDRKPMYKLDESDDEADMMPGKSGTKKQEIEKIVRTDVKDDSCQACGGD
SNLLYCKTCNYAYHPKCLVPPLKAPLPSSWSCPECVSPLNDIDKILDCEMRPTVAEDQDA
SKLGSKQVFVKQYLVKWKGLSYLHCTWVPEKEFVKVYKAYPRLKTKVNNFHRQMSSMTNS
EDEYVAIRPEWTTVDRILACRGDGEEKEYLVKWKELPYDECYWEFESDISSFLHEIERFH
VVQSRRKKFSSKQKGRPIETTESNKKAKEFQQYESSPEFLSGGSLHPYQLEGLNFLRFAW
SKQTHVILADEMGLGKTIQSIALLASLFEEKVSPHLVIAPLSTLRNWEREFATWAPQMNV
VMYVGGAQARAVIREYELFFPKNLKKTKKKKSGQIVGESKQDRIKFDVLLTSYEMILMDS
ASLKPITWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFL
DAGKFGSLEEFQQEFADISQEEQVSRLHKMLAPHLLRRLKKDVMTELPPKKELILRVELS
SKQKEYYKAILTRNFQILTRKGGAQISLINVVMELRKLCCHPFMLEGVEPEDNDEFTKEL
LESSGKLQLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCNYRKWQYERIDGKVGGAER
QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ
TNKVMIFRLITRGTIEERMMQMTKKKMILEHLVVGRLKAQNINQEELDDIIRYGSKELFA
DDNDEAGKSRQIHYDDAAIDRLLDREQVIDEDAAANDDEEDSFLKAFKVANFEYVEEAEA
TAEEEASTAPVENKATVNNSERASYWEELLRDKYEVHQVEEFKTMGKGKRSRKQMVSVDD
DDLAGLEDVSTDGEDDSYDAEADSSDGETASLGAPVLRKAHRKKARVDSAEPLPLMEGEG
RSFRVLGFNQSQRAAFVQILMRFGAGEFDWADFTPRLKQKTYEEIQDYGALFLSHISEEI
TDSPTFSDGVPKEGLRIPDVLVRIAVLLLIRDKVKAFSEMTGGSLFADDIMSRYPGLKGG
KHWKDEHDLLLLRALLKHGYGRWQTIVDDKELSIQEIICKELNLSVINLPVPGASQPQVA
PARGPSHDLPASGVPQAEFTVPGAFQPPHCVNTANAGSVGGQVKATGDGNICGAELSHGT
SDPSNRQVIQDSSSLYHHYREMQRKQVEFIKKRVLLLEKGLNAEYQKEAFDDEKSHELPN
EGMACDTKVVDEPNRNVEEANTEMTDHSPRLVAISPQGISQVACDSKPDRLSVAELYNKM
CLVLSGNVQDSFNESHPSSGMRKNILPLEAICQQMNQILSSPQQNTPNFGRKLVQEDRNS
EAGKSSYPVPSSQVDDRVLNAEKEHDSVLKKPESGSKSASSCTVASMTENHHNVTPAVLE
TRPSSISTGDDDIEMVDISTSNA
NT seq 4392 nt   +upstreamnt  +downstreamnt
atggctagtttggtggagagacttcgtgtgcggtcagatcgaaaacctatgtacaagtta
gatgagtctgatgatgaagctgatatgatgcctggaaaatctgggactaagaaacaggaa
attgagaaaattgttcgaactgatgtgaaagacgactcctgtcaagcttgtggaggagat
agtaatcttttgtattgtaaaacgtgtaactatgcttaccaccccaagtgtttagttcct
ccactaaaggctcctcttccaagcagttggagttgccctgaatgtgtgagtcccctgaat
gatattgacaaaatattggactgtgaaatgcgccctactgttgctgaggatcaggatgct
tccaagctagggtcgaagcaagtatttgttaaacagtaccttgttaagtggaaaggattg
tcgtatcttcactgcacatgggtgccagagaaagagttcgtaaaagtttacaaagcatat
ccccgtttgaagactaaagtgaataacttccatcgccaaatgtcatcaatgactaactct
gaagatgaatacgtcgcaatccgacctgagtggactacagttgatcgaattcttgcttgc
aggggagacggtgaagagaaagagtatcttgttaagtggaaggagcttccgtatgatgag
tgctactgggaatttgaatcagacatttcttcttttctgcacgaaattgaaagatttcat
gtagttcagtctagacgtaaaaaattttcaagtaagcaaaagggaaggcctatagagaca
actgaatctaacaagaaagccaaagagtttcaacagtacgaaagcagtcctgaatttctt
tctggaggatcactgcatccataccagcttgaagggctgaatttcctgcgttttgcttgg
tccaaacagacacatgtcattctggctgatgaaatggggctaggcaaaacaatacagagt
attgcacttctagcctctctttttgaagagaaggtctctccacatttagtaattgcacct
ctttcgacattgagaaattgggagcgtgagtttgccacttgggctcctcaaatgaatgtg
gttatgtatgtgggaggcgcacaagctcgtgctgttattagagaatatgaactttttttc
cccaaaaatcttaagaagaccaagaaaaagaaatctggtcaaattgttggtgaaagcaag
caagatagaataaaatttgatgtcctcctcacatcatacgaaatgatcctcatggatagt
gcctctctgaagccaatcacgtgggagtgcatgattgttgatgaaggtcatcgtcttaag
aacaaggattccaagttgttttcatctttgaagcagtactctagcaggcaccgtgttctt
ttgactggaactcctctccagaacaatctggatgaacttttcatgctgatgcacttcctt
gatgctgggaagtttggtagcttggaggaattccagcaagagtttgcggacattagtcag
gaggaacaggtttcaagacttcataaaatgctggcacctcatctgctcagaagactcaag
aaagatgtcatgactgagctgcctcctaaaaaggaactcattttacgtgtggaactgagt
agcaagcagaaagaatattacaaagctattctgactcgtaacttccagatactgactcgc
aagggaggtgctcagatttcgcttataaatgtggtgatggagctgcgcaaactttgctgt
catccatttatgttagaaggtgttgagccagaggacaatgatgagtttaccaaagagctg
ctggaatcatctggaaaattgcaacttctggacaagatgatggttaggcttaaagaacaa
ggacacagagttcttatatattctcaatttcagcatatgcttgatttgctggaagactac
tgtaattataggaaatggcaatatgaaaggattgatggaaaagttggcggagctgagaga
caaatccgaattgatcgatttaatgctaaaaattcttcaagattttgtttcctgctttca
acaagggcagggggtttaggaataaacctggcaactgctgatacagtaatcatttatgac
agtgattggaatccccatgctgacctacaagcaatggccagagctcatcggcttggacaa
acaaataaggtgatgatcttccgactcataacaagaggaacaattgaagaaagaatgatg
cagatgactaagaagaaaatgattttggaacatctcgttgttggacggcttaaagctcaa
aacatcaatcaggaagaattagatgacatcataaggtatggatcaaaagaattatttgct
gatgacaatgatgaggctggaaaatcccgacaaattcattatgatgatgctgcaatagat
agacttcttgatcgtgagcaagttatagatgaggatgctgcagcaaatgatgatgaggag
gattcatttctgaaggcttttaaggttgctaattttgaatacgttgaagaagcagaagca
acagcagaggaggaagcatcaactgcccctgtggagaataaagcaactgtaaacaattct
gagagggcatcttattgggaagaactgctacgagataaatatgaagtgcatcaagttgaa
gaattcaagaccatggggaagggaaagaggagtcgtaagcagatggtgtctgttgacgat
gatgatcttgctggtctggaggatgtgagcaccgacggagaggatgacagctatgacgct
gaagctgattccagtgatggtgagacagcttcactgggagcgccagttttgaggaaggct
cacagaaagaaagcccgcgttgattctgctgaaccactccctttgatggaaggagaagga
agatcatttcgggtactggggttcaatcaaagccaaagggcagcatttgtccaaattttg
atgagatttggggctggtgagtttgactgggcagacttcactccacgattgaagcagaaa
acttatgaagaaattcaagattatggagctctctttttgtcacacatatctgaagaaatc
actgactcaccaacattttcagatggtgttccaaaagaaggacttagaataccagatgtg
cttgttaggatagctgtcttgcttcttataagggacaaggtgaaggctttttcagaaatg
acaggtggctcgctttttgccgacgatattatgtctcggtaccctggattgaaaggtgga
aaacattggaaggatgagcacgatctgctgttgctacgggccttgttaaaacatggttat
ggaagatggcagacaattgttgatgacaaggagttgagcatccaagagatcatctgcaaa
gaactgaatctttccgtcataaatttacccgttcctggagcttctcaaccacaagttgct
cctgctcgaggaccttcacatgatcttccagcttccggagttccccaagcagaatttact
gttcccggagcttttcaaccaccacattgtgtaaatacagcaaatgctgggtctgttgga
ggtcaggtgaaagctactggtgatgggaatatctgtggagctgaactttcgcatgggact
agtgatccttcaaaccgacaagttatccaagattcgtcttcattgtatcatcattataga
gagatgcagagaaaacaagttgaattcatcaagaaaagggtgctacttcttgagaagggc
cttaatgcagaatatcagaaagaagcctttgatgatgaaaaatcccatgaactgcccaat
gaagggatggcgtgtgataccaaggttgtggatgaaccaaatcgaaatgttgaagaagcc
aatactgaaatgactgaccattccccaagacttgtagcaatttctccacagggaatctct
caagttgcttgtgatagtaaaccagaccgtttaagtgttgcagagctttataacaagatg
tgcctggtactttctggaaatgtccaagactcatttaatgagagtcaccctagttcaggg
atgagaaagaacatccttccgttggaagcaatttgtcaacagatgaaccaaattctttct
tctcctcagcaaaatactcctaattttgggaggaaactggttcaagaagatcggaattct
gaagctggtaaatccagttatccagtcccttcatctcaagtagatgatagggtgctcaat
gctgagaaagaacatgacagtgttctaaaaaagccagaatctggatccaagagtgctagc
agttgtacagttgcaagtatgactgagaaccaccacaatgttactcctgcagttctggag
actagacctagtagtatatcaactggagatgatgatatagaaatggtggacatttctact
tcaaatgcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (16)   
   Pfam (16)   
All databases (28)   

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