KEGG   Sphingobium sp. EP60837: EP837_02925
Entry
EP837_02925       CDS       T04432                                 
Name
(GenBank) DNA ligase (ATP)
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphb  Sphingobium sp. EP60837
Pathway
sphb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EP837_02925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphb03400]
    EP837_02925
Enzymes [BR:sphb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EP837_02925
DNA repair and recombination proteins [BR:sphb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EP837_02925
SSDB
Motif
Pfam: DNA_ligase_A_M RNA_ligase
Other DBs
NCBI-ProteinID: ANI79319
UniProt: A0A173KYN1
Position
2:299284..299892
AA seq 202 aa
MLQTMVPHLGFVPTMQPTLVHDAPEGDQWLHEIKYDGYRTELLLDGNNGRAYTRNGHDWS
DKYRLILEAAQSLRGSPALLDGEVIVQGEAGLSDFHAVRRTITSHPERLVFYAFDLMMLE
SQDIRREPLTDRRARLRDMIGEHDAAFPIQFSDHIVGHGAEFFHKAEQLGLEGIVSKLAD
SRYRAGYSTSWLRSRRLRLGSS
NT seq 609 nt   +upstreamnt  +downstreamnt
atgctgcagacgatggttccccatctgggctttgtcccgactatgcagccgacgcttgtt
cacgacgcgccggagggggatcagtggctccacgagatcaaatatgatggctaccggact
gagttgttgctcgatggcaataacggccgggcttacacccgcaacggccacgactggagc
gacaagtaccgcttgatcctagaagcggcgcagagcctgcgcgggagcccggcgctgctc
gatggcgaggtgatcgtccagggcgaagcaggcttgtccgacttccatgccgttcgccgg
accatcacgtcacatcccgaacgcctcgtcttctatgctttcgacctgatgatgttggag
agccaagacatccgtcgggagccgctgaccgatagacgcgcgcggctgcgcgatatgatc
ggtgagcatgacgctgcctttccgatccagttcagcgaccatatcgtggggcacggagcc
gagtttttccacaaagctgagcaactcgggctcgaggggatcgtctccaaattagcggat
agccgatatcgggccggctattcgacgtcatggctgagatcaaggcgtttacggttgggc
agttcgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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