KEGG   Sphingomonas hengshuiensis: TS85_20205
Entry
TS85_20205        CDS       T03848                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
sphi  Sphingomonas hengshuiensis
Pathway
sphi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sphi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TS85_20205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sphi03019]
    TS85_20205
   03400 DNA repair and recombination proteins [BR:sphi03400]
    TS85_20205
Enzymes [BR:sphi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     TS85_20205
Messenger RNA biogenesis [BR:sphi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     TS85_20205
DNA repair and recombination proteins [BR:sphi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      TS85_20205
SSDB
Motif
Pfam: DEAD HRDC RQC Helicase_C RecQ_Zn_bind ResIII DNA_pol_A_exoN
Other DBs
NCBI-ProteinID: AJP73626
UniProt: A0A7U4JB90
Position
4429009..4430790
AA seq 593 aa
MQDPRDILRKTFGFPDFRGVQPQVIARVMAGANTLAVMPTGAGKSLCYQVPSLALEGTCV
VVSPLIALMHDQLRAAEAVGIRAATLTSADENRDETIARFRAGELDLLYVAPERASNESF
RRLLEQARLSLFAIDEAHCVSEWGHDFRPDYRLLRPLLDRFEGVPRLALTATADAHTRAD
IAEQLGIPQDGMIVAGFDRPNIRYAIAPRENTTRQIQDLLAEQPGPGIVYAQSRAGVDKL
AATLAAGGRRVLPYHAGLDPQVRRRNQAAFVASEDMVIVATIAFGMGIDKPDVRFVAHAG
LPKSIEAYYQETGRAGRDGDPAVAHLFWGADDFARARQRIGEVEPARQPGERTRLAALGA
LVETAGCRRRILLRHFGEDAPETCGNCDNCLSPPAAVDASVVAQKFLSAVFRTGMSFGAG
YIESILLGQSTERSMTNGHEALSVFGIVSGEEAALIKPVARALLLRDALRANEHGGLEFG
PGAKPILKGAADVKLVLPPKRERRGRRGAAGAGGGGGANPVGHPLFEALRAKRREIAQET
GLPPYVIFHDSVLRDMALARPDTMAALGQISGVGARKLEAYGSAFLTVIREAE
NT seq 1782 nt   +upstreamnt  +downstreamnt
gtgcaggacccccgcgacattctccgcaagacctttggctttcccgactttcgcggggtc
cagccgcaggtgatcgcacgggtgatggcgggggccaatacgctggcggtgatgccgacg
ggtgcgggcaagtcgctgtgctatcaggtgcccagcctcgcgctggaggggacgtgcgtc
gtcgtgtcgccgctgatcgcgctgatgcacgaccagctccgcgcggccgaggcggtgggc
atccgcgccgcgacgctgaccagcgccgacgagaatcgcgacgagacgatcgcgcggttc
cgggcgggggagctggacctgctctatgtcgcgccggagcgggcgtcgaacgagagcttc
cggcggttgctggagcaggccaggctgagcctgttcgcgatcgacgaggcgcattgcgtg
tccgaatgggggcatgatttccgccccgactatcgcctgctgcgcccgttgctcgatcga
ttcgaaggcgttccccggctggcgctgaccgcgaccgccgatgcgcatacccgcgccgac
atcgccgaacagctcggcatcccgcaggacgggatgatcgtcgcggggttcgaccggccc
aatatccgctatgcgatcgccccgcgcgaaaacaccacgcgccagatccaggacctgctc
gccgagcagccggggccggggatcgtctatgcgcagagccgcgcgggggtggacaagctg
gcggcgacgctggcggcgggcgggcggcgggtgctgccctatcatgccgggctcgacccg
caggtgcgccgccgcaaccaggcggcgttcgtcgcctccgaggacatggtgatcgtcgcg
acgatcgcgttcgggatggggatcgacaagcccgatgtccgcttcgtcgcgcatgccggg
ctgcccaagtcgatcgaggcctattatcaggaaaccgggcgcgccgggcgcgatggcgat
ccggcggtggcgcatctgttctggggcgccgacgatttcgcgcgcgcgcgccagcggatc
ggcgaagtcgagccggcgcgccagccgggcgagcggacgcggttggccgccttgggcgcg
ctggtcgagaccgccggatgccgccgccgcatcctgctgcgccatttcggcgaggacgcg
cccgagacctgcggcaattgcgacaactgcctctcgccccccgccgccgtcgatgccagt
gtcgtcgcgcagaaattcctgtcggccgtgttccgcaccggcatgagctttggcgcgggc
tatatcgagagcatattgctcggccagtcgaccgagcgcagcatgaccaacgggcatgag
gcgctgtcggtgttcgggattgtgtcgggtgaggaagcggcgctgatcaagccggtcgcg
cgcgcgctgctgctgcgcgacgcgctgcgcgccaacgagcatggcgggctggaattcggc
cccggcgccaagccgatcctgaagggcgccgcggacgtcaagctggtgctgccgcccaag
cgcgagcggcgcgggcggaggggtgctgcgggtgctggcggcggcggcggggcgaacccg
gtcgggcatccgctgttcgaggcactgcgcgccaaacgccgcgagatcgcgcaggaaacc
gggctgccgccctatgtgatcttccatgattcggtgctgcgcgacatggcgctggcgcgg
cccgacaccatggccgcgctgggccagatttcgggcgttggcgcgcgcaagctggaagcc
tatggttcggcgttcctgaccgtgatccgcgaggcggaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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