KEGG   Sphingopyxis sp. MG: C3E99_17090
Entry
C3E99_17090       CDS       T05382                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spho  Sphingopyxis sp. MG
Pathway
spho03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spho00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C3E99_17090 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spho03400]
    C3E99_17090 (ligD)
Enzymes [BR:spho01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C3E99_17090 (ligD)
DNA repair and recombination proteins [BR:spho03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C3E99_17090 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AVA15340
UniProt: A0A2L0VTV4
Position
complement(3728041..3730566)
AA seq 841 aa
MARRADPLAQYKAKRDFAATPEPAGQVAKGKAAKAEGGRFIVQKHDATRLHYDFRLEADG
VLKSWAVTKGPSADPADKRLAVRTEDHPLAYADFEGAIPKGEYGGGTVMLWDRGTWAPVA
GKSAKDIDRGHLHFTLDGERMKGEWLLVRMKPRAGEKRENWLLRKIDDAHAGGSDDLVGR
HLTSVLTGRTMAEIAGDVGGAQSLRGAKGAAFTQKMKAAAKHNAAVAKRRAGGGKPPAFR
KPQLATLVDAVPGGNNWFHEIKYDGYRALVAAAGSAVRIHTRNGLDWTDKFAPLAAQFAA
LDLPPCLIDGEIVAYDGAGNPDFSSLQAVIKRGHGAQDADTALNFFAFDLLEEDGKSLAK
LGNLERKERLEALLRAAAPPIAVADHVIGAGERLYTAMCGAGQEGIISKRADAPYAGRRT
RNWVKVKCTRRQEFIIVGWKPSSAKARPFASLLLAQREGDALVYKGNVGTGFDAATMAML
ARKFASRARKTPPLAVERAAARDVRWLTPDLVAEIAFAEYTAGGSVRHASFVGLREDKEA
KDVTPETKQAAPRPTADVRISNRDRVIFPESKATKGDLADYYAAVAPIMLPHMARRPVSL
VRCPQGRAKQCFFQKHDSGSFGPQVHHVPIREKDGGVEDYLYVEDAGGILACVQMGTIEF
HGWGSHVDTLEAPDRMVFDLDPDEGLDFGDVRKAAADLHRQLSDIGLISFAMLSGGKGVH
VVVPLDPGPDWDAHKDFAKRFAEALSLAEPDRFTATMSKAKRKGKIFIDWLRNQRGSTAI
MPWSARAREGAPVAAPIGWDALADIDSPRHWTIADADALLERAASAELKGWGFARQTLPD
L
NT seq 2526 nt   +upstreamnt  +downstreamnt
atggcgcggcgcgccgacccgctcgcgcagtacaaggccaagcgcgacttcgccgccacc
cccgagccggcggggcaggtggcgaagggaaaggcggcgaaggcggaaggcgggcgcttc
atcgtccagaagcacgacgcgacgcgccttcattatgacttccgcctcgaggccgacggt
gtgctcaagagctgggcggtgacgaaggggccgagcgccgatcccgccgacaagcggctc
gcggtgcgcaccgaggatcatccgcttgcctacgccgatttcgagggcgcgatccccaag
ggtgaatatggcggcggcacggtgatgctgtgggaccgcggcacctgggcgccggtcgcg
ggcaagagcgcgaaggacatcgatcgcggccatctgcacttcacgctcgacggcgaacgg
atgaagggcgaatggctactcgtccgcatgaagccgcgcgcgggcgaaaagcgcgagaac
tggctgctgcgcaagatcgacgacgcccatgccggcggcagcgacgatctggtcgggcgc
catctaacgagcgtcctcaccggccgcaccatggccgagatcgcgggcgacgtgggtggc
gcgcagtcgctgcgcggtgcgaagggcgccgccttcacgcagaagatgaaggccgcggcg
aagcataatgcggcggtcgcgaagcgccgcgccggcgggggcaagccgcccgcctttcgc
aagccccagctcgcgacgctcgtcgatgcggtgccgggcggcaacaactggttccacgag
atcaaatatgacggctatcgcgcgctcgtcgcggcggcggggagcgcagtgcgcatccat
acgcgaaacggcctcgactggaccgacaagttcgcgccgctcgccgcgcagttcgccgcg
ctcgacctgccgccgtgcctgatcgacggagagatcgtcgcctatgacggtgcgggcaat
cccgatttctcgtcgctgcaggcggtgatcaagcgcggccatggcgcgcaggatgccgat
acggcgctgaacttcttcgccttcgacctgctcgaagaggatggcaagtcgctggcgaag
ctgggcaatctcgaacgcaaggaacggctcgaagcgctgctgcgcgccgccgcgccgccg
atcgcggtcgccgatcatgtcatcggcgcgggcgaacgcctgtatacggcgatgtgcggc
gcggggcaggaaggcatcatctcgaagcgcgccgacgctccctatgccggccgccggacg
cgcaactgggtcaaggtcaaatgcacccgccgccaggaattcatcatcgtcggctggaag
ccgtcttcggcgaaggcgcgccccttcgcctcgctgctcctcgcgcagcgcgagggcgat
gcgctggtctacaagggcaatgtcggcaccggcttcgacgctgcgacgatggcgatgctg
gcgcgcaagttcgcgagccgtgcgcgcaagaccccgccgctggcggtcgaacgcgcggcg
gcgcgcgacgtccgctggctgacccccgacctcgtcgccgaaatcgccttcgccgaatat
accgccggcggatcggtgcgccacgcgagcttcgtcggcctgcgcgaggacaaggaggcg
aaggacgtgactccggagacgaagcaggcggcgccccgcccgaccgccgacgtgcggatc
agcaaccgcgaccgcgtcatctttcccgaatcgaaggcgaccaagggcgaccttgccgac
tattatgccgcggtcgcgccgatcatgctgccgcacatggcgcgccgtccggtcagcctc
gtccgctgcccgcaaggacgcgccaagcaatgctttttccagaagcatgattcgggatcg
ttcggtccgcaggtccaccatgtcccgatccgcgagaaggacggcggggtcgaggattat
ctctatgtcgaggacgccggcggcatcctcgcctgcgtccagatggggacgatcgaattc
cacggttggggcagccatgtcgacacgctcgaggcgcccgaccggatggtcttcgatctc
gaccccgacgaagggctcgatttcggcgacgtccgcaaggcggcggccgacctccatcgc
cagctttccgacatcggcctgatcagcttcgcgatgctgtcgggcggcaagggggtgcat
gtcgtcgtgccgctcgacccggggccggactgggacgcgcacaaggatttcgcgaagcgc
ttcgccgaagcgctcagcctcgccgagcccgaccgtttcaccgcgacgatgagcaaggcg
aagcgcaagggcaagatcttcatcgactggctgcgcaaccagcgcggcagcaccgcgatc
atgccctggtcggcccgcgcccgcgaaggcgcgccggtcgcggcgccgatcggctgggat
gcgctggcggacatcgacagcccgcgccactggacgatcgccgacgccgatgcgctgctc
gaacgcgcggcgagcgccgagctcaagggctggggcttcgcgcgccagacgcttcccgat
ttgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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