KEGG   Sphingobium sp. RAC03: BSY17_630
Entry
BSY17_630         CDS       T04461                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sphr  Sphingobium sp. RAC03
Pathway
sphr03030  DNA replication
sphr03410  Base excision repair
sphr03420  Nucleotide excision repair
sphr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sphr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BSY17_630 (ligA)
   03410 Base excision repair
    BSY17_630 (ligA)
   03420 Nucleotide excision repair
    BSY17_630 (ligA)
   03430 Mismatch repair
    BSY17_630 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sphr03032]
    BSY17_630 (ligA)
   03400 DNA repair and recombination proteins [BR:sphr03400]
    BSY17_630 (ligA)
Enzymes [BR:sphr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BSY17_630 (ligA)
DNA replication proteins [BR:sphr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BSY17_630 (ligA)
DNA repair and recombination proteins [BR:sphr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BSY17_630 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BSY17_630 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     BSY17_630 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BSY17_630 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB DNA_ligase_ZBD HHH_2 BRCT PTCB-BRCT 5_3_exonuc
Other DBs
NCBI-ProteinID: AOF97177
UniProt: A0A1B3MVN3
Position
complement(643027..645144)
AA seq 705 aa
MIDPATLSDADAANRLMRLAREVAKHNRLYHDDDAPEITDAAYDALIAENNALEAAFPHL
VRADSPNAQVGAAPTSALKKVAHAQRMMSLDNGFADADIGEFIARVRRFLALAEDAPVAL
TAEPKIDGLSCSLRYEKGELVLAATRGDGATGEDVTANVRTIGDIPDRLTGEAVPDLFEV
RGEVYMAKADFTALNARLMAEADEPEKARQFANPRNAAAGSLRQKDASVTASRPLRFLAH
GWGAHSDLPADTQLGVMQAIAAWGLPVSDMLVRVETLEALLAHYRGIERARADLPFDIDG
VVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPV
TVGGVVVSNVTLHNADEIARLGVRPGDRVVVQRAGDVIPQVVENLSRDETRAPYVFLAQC
PICQSEAVREEGEVDYRCTGGLICPAQRFERLRHFVSRVALDIEGLGEKSIQEFLDLGWI
TEPADIFRLKRHRAELVGREGWKEKSVDNLLAAIEAKRAPDAARLLFGLGIRHVGAVTAR
DLLKRYTTLEAVRALAQEIMALREAAPEGETQAKRDKAIAEHIGVENVGAAVGHALADFF
HEPHNVTAWEDLLSEVSPPPYVVETTASAVTGKTIVFTGKLETMSRDEAKAQAERLGAKA
AGSVSAKTDLVVAGPGAGSKLKQASALGIEVIGEEAWAEIVRAAG
NT seq 2118 nt   +upstreamnt  +downstreamnt
atgatcgatcctgctaccctgtccgacgccgatgctgccaaccgtttgatgcgcctggcg
cgcgaggtggcgaagcataatcggctttatcatgacgacgacgcgccggagattacggat
gcggcctatgatgcgctgattgcagagaataacgcgcttgaagcggcgtttccgcatctg
gtgcgggccgattcgcccaatgcgcaggtcggggcagcgccgacgtcggcgctcaagaaa
gtcgcgcatgcgcagcggatgatgagcctcgacaatggctttgccgatgcggacatcggt
gagtttatcgcgcgggttcggcgctttctggcgttggcggaggatgcgccggtggcgctg
acggccgagccgaagatcgatggcctgtcctgttcgttgcgttatgaaaagggcgaactg
gtcctggccgcgacgcggggggacggggcgacgggcgaggatgtgaccgccaatgtccgg
accattggcgatattcccgatcgcctgacgggcgaagccgtgcccgacctgttcgaggtg
cggggcgaagtttatatggcgaaggcggattttactgcgctcaacgcccggctgatggct
gaggcggacgaaccggagaaggcgcggcaatttgccaatccgcgcaatgccgccgccgga
tcgctgcggcagaaggatgcgagcgtgaccgccagccgtccgttgcgtttcctggcccat
ggctggggcgcgcatagcgatttgcccgccgatacgcagcttggcgtgatgcaggcgatt
gcggcctggggattgccggtgtccgacatgctggtgcgggtagagacgcttgaggcgctg
ctcgcccattatcgcggtatcgagcgggcgcgggcggacctgccgttcgatatcgatggg
gtcgtgtataaggtcgaccggctcgactggcagcagcgattgggtttcgtcgcgaaagcg
ccgcgctgggcgatcgcgcataaattcccggccgaacgcgcacagacgacgctggaggcg
atcgacattcaggtcgggcgtaccggcaagctgacgccggtagggcggctgaccccggtg
acggtcggcggcgtggtggtgtccaatgtgacgctgcacaatgccgatgagattgcgcgg
ctgggcgtgcggccgggcgaccgggtggtggtgcagcgggcgggcgatgtcatcccgcag
gtggtcgagaatctgagccgtgatgagacgcgtgcgccttatgtctttctggcccaatgt
ccgatctgccagagcgaggcggtgcgcgaagagggcgaggtcgattatcgctgtacgggc
gggctgatctgtccggcgcagcggttcgagcggctgcgccatttcgtcagtcgcgtggcg
ctggatattgaggggctgggcgagaagtcgattcaggagtttctggatctgggctggatc
accgaaccggccgatatttttcgcctgaaacgccatcgcgccgaactggtcgggcgcgag
gggtggaaggaaaaatcggtcgacaatctgctcgccgcgattgaggcgaagcgcgcgcct
gatgccgcgcggctgttgttcgggctgggcatccgccatgtcggcgcggttacggcgcgg
gatttgctcaagcgctacacgacgctggaagcggtgcgggcgctggcgcaggagatcatg
gcgctgcgggaggcggcgccggagggcgagacgcaggccaagcgcgacaaggcgatcgcc
gaacatatcggggtggagaatgtcggcgcggcggtgggccatgcgctcgccgatttcttc
catgagccgcataatgtgacggcgtgggaggatctgctaagcgaagtatcgccgccgcct
tatgtggtggaaaccaccgccagcgcggtgacgggcaagacgatcgtgttcaccggcaag
ctggagacgatgagccgcgatgaggccaaggcgcaggcggagcggctgggggccaaggcg
gcgggatcggtcagtgccaagacggacctggtggtcgcggggccgggggcggggagcaag
ctcaagcaggcgagtgcgctggggatcgaggtgatcggcgaggaggcctgggcggagatc
gtcagggcggcgggttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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