KEGG   Sphingorhabdus sp. YGSMI21: CHN51_04620
Entry
CHN51_04620       CDS       T05308                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
sphy  Sphingorhabdus sp. YGSMI21
Pathway
sphy00010  Glycolysis / Gluconeogenesis
sphy00020  Citrate cycle (TCA cycle)
sphy00260  Glycine, serine and threonine metabolism
sphy00280  Valine, leucine and isoleucine degradation
sphy00310  Lysine degradation
sphy00380  Tryptophan metabolism
sphy00620  Pyruvate metabolism
sphy00630  Glyoxylate and dicarboxylate metabolism
sphy00640  Propanoate metabolism
sphy00785  Lipoic acid metabolism
sphy01100  Metabolic pathways
sphy01110  Biosynthesis of secondary metabolites
sphy01120  Microbial metabolism in diverse environments
sphy01200  Carbon metabolism
sphy01210  2-Oxocarboxylic acid metabolism
sphy01240  Biosynthesis of cofactors
Module
sphy_M00009  Citrate cycle (TCA cycle, Krebs cycle)
sphy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sphy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
sphy_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sphy00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    CHN51_04620 (lpdA)
   00020 Citrate cycle (TCA cycle)
    CHN51_04620 (lpdA)
   00620 Pyruvate metabolism
    CHN51_04620 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    CHN51_04620 (lpdA)
   00640 Propanoate metabolism
    CHN51_04620 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    CHN51_04620 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    CHN51_04620 (lpdA)
   00310 Lysine degradation
    CHN51_04620 (lpdA)
   00380 Tryptophan metabolism
    CHN51_04620 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    CHN51_04620 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sphy04147]
    CHN51_04620 (lpdA)
Enzymes [BR:sphy01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     CHN51_04620 (lpdA)
Exosome [BR:sphy04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   CHN51_04620 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_oxidored FAD_binding_2 NAD_binding_8 GIDA AlaDh_PNT_C HI0933_like Thi4 FAD_binding_3 3HCDH_N
Other DBs
NCBI-ProteinID: ATW02892
UniProt: A0A2D3RB11
Position
complement(966826..968232)
AA seq 468 aa
MTDNFDYDLLIIGSGPGGYVAAIRAAQLGLKTGCIESRETLGGTCLNVGCIPSKAMLHAS
ELYHEAHSGALEKFGVKLTGAKLDLKQMLAEKLKAVSELTGGIELLFKKNKVDWIKGRGA
FEDAHTVKVGDKSYTAKNILIATGSSVTPLPGVEIDNDKHVVVDSTGALELPKVPGHMVV
IGGGVIGLELGSVWLRLGAKVTVVEYLDQILPGMDGAIRKDAARMFKKQGFDIKTGTKVT
GCTVKGKKATLTMEPAKGGDSETLEADVVLVAIGRKPNIDGLALEKSGVETNDRGQIEVG
HDFQTKVPGVYAIGDVTPGPMLAHKAEDEGIAAAEFIAGQQGIVNHDLIPGVVYTYPEIA
SIGKTEEEVKDSGTEYKVGKFVFAANSRAKTNRDTEGYVKVIADAKTDRVLGCHIISSLA
GTMIAQVTQAMEFGATSEDIAYTCHAHPTHSEAIKEAAMAVQGKPIHM
NT seq 1407 nt   +upstreamnt  +downstreamnt
atgaccgacaatttcgactatgatcttctgataatcggctccggccccggcggctatgtc
gcagcgatccgcgccgcgcaactcggtctgaagaccggctgcatcgaaagccgcgagacg
ctgggcggcacttgcctcaatgtcggttgcatcccgtccaaggcgatgctgcacgcttcg
gaactctatcacgaggcccatagcggcgcgctggagaaattcggcgtcaagctgaccggc
gcgaagctcgacctcaagcagatgttggccgagaagctgaaggctgtctccgaattgacc
ggcggcatcgaactgctgttcaagaagaacaaggtcgactggatcaagggccgcggcgcg
tttgaagatgcgcacacggtcaaggttggcgacaaaagctataccgcgaaaaatatcctg
atcgccaccggctcttcggtcaccccgttgccgggcgtcgagattgacaatgacaaacat
gtcgtggtcgattcgacgggcgcgctcgaactgcccaaggttcccggccatatggtcgtg
atcggcggcggcgtgatcgggctggaactgggcagcgtgtggctgcggctcggtgcgaaa
gtcacggtggtggaatatctcgaccagattctgcccggcatggatggcgcgatccgcaag
gatgcggcgcggatgttcaagaaacagggtttcgatatcaagaccggcaccaaggttacc
ggctgcaccgtcaagggcaagaaggcgactctcaccatggaaccggccaagggcggcgac
agcgagacgctggaagccgatgtcgtgctggtggcaatcggccgcaagccgaatatcgac
gggctggcgctggaaaaaagcggcgtcgaaaccaacgaccgcggccagatcgaggtcggc
cacgatttccagaccaaggttcccggcgtctatgcgattggcgatgtgacccccggtccg
atgctcgcgcacaaggccgaggacgaaggcattgccgcggcggaatttatcgccggacag
cagggcatcgtcaatcacgacctgatccccggcgtcgtctatacctatcccgaaattgcc
agcatcggcaagaccgaggaagaggtgaaggacagcggcaccgaatataaggtcggcaaa
ttcgtcttcgccgccaacagtcgcgccaagaccaatcgcgacaccgaaggctatgtgaag
gttatcgccgacgcaaagaccgaccgcgtgcttggctgccacatcatctcgtcgctcgcc
ggcacgatgatcgcgcaggtcacccaggcgatggaatttggtgcgaccagcgaggatatc
gcctatacttgccacgcccatccgacccattcggaagcgatcaaggaagcggccatggcg
gtgcaaggcaagccgatccatatgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (23)   
   KEGG PATHWAY (16)   
   KEGG MODULE (7)   
Chemical substance (27)   
   KEGG COMPOUND (27)   
Chemical reaction (11)   
   KEGG ENZYME (1)   
   KEGG REACTION (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (82)   

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