KEGG   Sphingomonas sp. LM7: BXU08_07665
Entry
BXU08_07665       CDS       T04824                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
splm  Sphingomonas sp. LM7
Pathway
splm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:splm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BXU08_07665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:splm03021]
    BXU08_07665
   03400 DNA repair and recombination proteins [BR:splm03400]
    BXU08_07665
Enzymes [BR:splm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BXU08_07665
Transcription machinery [BR:splm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BXU08_07665
DNA repair and recombination proteins [BR:splm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BXU08_07665
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 B
Other DBs
NCBI-ProteinID: AQR73532
UniProt: A0A1S6FIT0
Position
1663491..1667645
AA seq 1384 aa
MATKAIEGGTMKRRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSDPSIGYVSGLEKTLR
SVFPIRDFAGTAELDFVNYELENPKFDVEECRQRGITYAAPMRVTLRLIVFEVDPDTEAR
SVLDIKEQDVYMGDMPLMTGNGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLF
AARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGMNSEDILNYFYNRVTYVR
GPGGWQIPFAAENWRGAKPMFDIVDAKSGEIVFPAGQKISPRAANKSAKDGLETLLIPTE
EIFGRYSAYDLINESTGEIYIEAGDEVSAENLELLDKAGIEKLELLDIDHISTGPWIRNT
LKVDKAEEREQALSDIYRVMRPGEPPTLETAESLFAGLFFDPERYDLSAVGRVKLNMRLD
LDAEDTVTTLRTEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLR
MERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGFIETP
YRRIIDGKVTNDVVYLSAMEEAKHTIAQASAELDGESRFTEDLVSSRQAGEFLMALPEQI
TLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTGMEETVAR
DSGAAIGARRSGIVDQVDATRIVIRASGDVEATASGVDIYTLMKFQRSNQSTCINQRPLV
KVGDVVNAGDIIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIVKDDVFTSI
HIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIDKDERAMAIERE
EIERLKKDSDDERNILNRATWSRLKEMLLGQVATATPKGLKKGATIDADLLDSVDRHEWW
RFSVQDDAMQSNLEAVKAQYDEAVKRIKEKFDDRREKLERGDELPPGVLKMVKVFVAVKR
KLQPGDKMAGRHGNKGVISRILPAEDMPFLADGTPVDLVLNPLGVPSRMNVGQIFETHLG
WAARQLGQQIGVALEDWRHANPDAVGGDMPDAVKTRLKEVYGDHYLAEIEARTSDQIIEL
AGNLKPGVPMATPVFDGAREADVSEMLALAGLDTSGQSDLFDGRTGDMFDRKVTVGIIYM
LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLT
VKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKNDEPGFDDDGVQ
IAAE
NT seq 4155 nt   +upstreamnt  +downstreamnt
atggcaaccaaagcgatcgaaggcggcacgatgaagcgccgcatccgcaaggtgttcggc
aacatccacgaagtggtgcagatgccgaacctgatcgaggttcagcgcgaatcctacgag
cagtttctccgcagcgatccttcgatcggctatgtctcgggcctcgagaagacgctccgg
tcggtgttcccgatccgcgacttcgccggcaccgccgagctggacttcgtcaactacgaa
ctcgagaaccccaagttcgacgtcgaggaatgccgtcagcgcggcatcacctacgcagcg
ccgatgcgcgttacccttcgcctgatcgtgttcgaggtggatcccgatacggaagcccgt
tcggtcctcgatatcaaggagcaggacgtctacatgggcgacatgcccctgatgacgggc
aacggcaccttcttcatcaacggcaccgagcgcgtcatcgtcagccagatgcaccgctcg
ccgggtgtcctgttcgatcatgaccgcggcaagacgcacgcgtcgggcaagtatctcttc
gccgcccgcgtgatcccgtatcgcggctcttggctcgatttcgagttcgacgccaaggac
atcgtcaacgtccgcatcgaccgcaagcgcaagctgccggtgacgtcgctgctctatgcc
ctgggcatgaacagcgaggacatcctcaattacttctacaaccgcgtgacctatgtccgc
ggtccgggcggctggcagattccgtttgccgccgagaactggcgcggtgccaagccgatg
ttcgacatcgtcgacgccaagtcgggcgagatcgtattccccgccggccagaagatcagc
ccgcgtgccgcaaacaagtcggccaaggacggtctcgagacgctgctgatcccgaccgag
gaaatcttcggccgctatagcgcctatgacctgatcaacgagtcgaccggcgagatctac
atcgaagccggcgacgaagtgtcggccgagaatctcgaattgctcgacaaggcgggcatc
gagaagctcgagctgctcgacatcgatcacatctcgacgggtccgtggatccgcaacacg
ctcaaggtcgacaaggccgaagagcgcgagcaggcgctgtccgacatctaccgcgtcatg
cgccccggcgagccgccgacgctcgagaccgcggaatcgctgttcgccggcctgttcttc
gatccggagcgctacgacctgtcggccgtgggccgcgtcaagctcaacatgcgcctcgac
ctcgacgccgaggacaccgtcacgacgctgcgcaccgaggacatcctcgcggtggtcaag
accctcgtcgacctcaaggacggcaagggcgaagtcgacgacatcgacaatctcggcaat
cgccgcgtgcgttcggtgggcgagctgctggagaaccagtatcgcgtcggcctgctccgc
atggagcgcgccgtgaaggagcgcatgagctcggtcgacgtctcgaccgtgatgccaaac
gaccttatcaacgccaagccggcggttgccgcggttcgcgaattcttcggttcgtcgcag
ctcagccagttcatggatcagaccaacccgctctccgaagtgacgcacaagcgtcgcgtt
tcggcgctcgggccgggtggtctcacgcgtgagcgcgcgggcttcgaagtccgcgacgtt
catccgacgcactatggccgcatctgcccgatcgaaacgccggaaggcccgaacatcggc
ctgatcaactcgctggcgagcttctcgcgcgtcaacaagtacggcttcatcgagacgccc
tatcgccgcatcatcgacggcaaggtgaccaacgacgttgtctatctgtcggcgatggaa
gaggccaagcacacgatcgcgcaggcgtcggcagagctcgacggcgagagccgcttcacc
gaggacctcgtctcgtcgcgtcaggcaggcgaattcctgatggcgctgcccgagcagatc
acgctgatggacgtcagccccaagcagctcgtctcggtcgccgcatcgctcattccgttc
ctggaaaacgatgacgccaatcgcgcgctgatgggctcgaacatgcagcgccaggccgtt
ccgctggtgaaggccgaagcgccgttcgtcggcaccggcatggaagagaccgtcgcccgc
gattcgggtgcagcgatcggcgcacgccgttcgggcattgtcgatcaggtcgacgcgacg
cgtatcgtcatccgcgcatcgggcgacgtcgaggcaaccgccagcggggtcgacatctac
acgctgatgaagttccagcgctcgaatcagtcgacctgcatcaaccagcgtccgctggtg
aaggtgggcgacgtggtcaacgccggcgacatcatcgccgacggcccatcgaccgagttc
ggcgagttggcactcggccgcaacgcgctcgtcgcgttcatgccgtggaacggctacaac
tatgaggattcgatcctcatcagcgagcggatcgtgaaggacgacgtgttcacgtcgatc
catatcgacgagttcgaagtgatggcccgcgacaccaagctgggaccggaggacatcacg
cgcgacatcccgaacgtcggcgaggaagcgctccgtaatctcgacgaagcgggcatcgtg
tacatcggtgcagaggtcgagccgggcgatatcctcgtcggcaagatcacgccgaagggc
gagagcccgatgacgccggaagagaagctgcttcgcgcgatcttcggcgaaaaggcctcg
gacgtgcgcgacacctcgctgcgcttgcccccgggcgttgccggcacgatcgtcgacgtc
cgcgtcttcaatcgccatggcatcgataaggacgagcgcgcgatggcgatcgagcgcgag
gaaatcgagcgcctgaagaaggactcggacgacgagcgcaacatcctcaaccgtgcgacc
tggtcgcgcctaaaggaaatgctcctcggccaggttgcgactgcgacgccgaagggcctc
aagaagggcgccaccatcgacgccgacctgctcgacagcgttgatcgtcacgaatggtgg
aggttctcggtccaggacgacgcgatgcagtcgaaccttgaagcggtgaaggcccagtat
gacgaggcagtgaagcgcatcaaggagaagttcgacgaccgccgcgagaagctggagcgc
ggcgacgagctgccgccgggcgtgctcaagatggtcaaagtcttcgtcgcggtgaagcgc
aagctgcagccgggcgacaagatggccggccgtcacggcaacaagggcgtcatctcgcgc
atcctgccggcggaggacatgccgttcctcgccgacggtacgccggtcgatctcgtgctc
aatccgctgggcgtgccttcgcgcatgaacgtcgggcagattttcgagacccatctcggc
tgggctgcgcgtcagctcggccagcagatcggcgtcgcgctggaagattggcgtcatgcc
aatcccgacgcggtcggcggcgacatgcccgatgcggtcaagacgcggctcaaggaagtc
tatggcgatcactatctcgccgagatcgaagcgcgcacgtccgaccagatcatcgaactg
gccggcaacctgaagcccggcgtgccaatggcgactccggtgttcgacggcgcacgcgaa
gccgacgtttccgaaatgctggcactggccggtctcgatacgtcgggccagtcggacctg
ttcgacggacgcacgggcgacatgttcgaccgcaaggtaaccgtgggcatcatctatatg
ctcaagcttcaccatctcgtcgacgacaagatccacgcgcgttcgatcgggccttactcg
ctcgtcactcagcagccgctgggtggtaaggcgcagttcggtggccagcgcttcggtgag
atggaggtctgggcactgcaggcgtacggcgcagcctataccctgcaggagatgctgacg
gtgaagtcggacgacgtggtcggccgcaccaaggtctacgaagcgatcgtcaagggcgac
gacaccttcgaggccggcatcccggagagcttcaacgttctcgtcaaggaaatgcgctcg
ctgggcctcaacgtcgaactcaagaacgacgagccgggcttcgacgacgacggcgtccag
atcgcggcggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system