KEGG   Schizosaccharomyces pombe (fission yeast): SPAC1851.04c
Entry
SPAC1851.04c      CDS       T00076                                 
Symbol
ric1
Name
(RefSeq) Ypt/Rab-specific guanyl-nucleotide exchange factor (GEF) subunit Ric1
  KO
K20476  RAB6A-GEF complex partner protein 1
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:spo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:spo04131]
    SPAC1851.04c (ric1)
Membrane trafficking [BR:spo04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Rab associated proteins
    SPAC1851.04c (ric1)
SSDB
Motif
Pfam: RIC1 ETRAMP PQQ_3
Other DBs
NCBI-GeneID: 2542510
NCBI-ProteinID: NP_594607
PomBase: SPAC1851.04c
Ensembl: SPAC1851.04c
UniProt: O42656
Position
I:complement(4503486..4506928)
AA seq 1052 aa
MYFLHGTPQRIQLSSRAIQICRIPKVSFFVVLTETEILIYQIRPLTLISKITKSQNLFER
HGKNKKIAVNSEYGIIAVATEKNYVAVYHFTLNASKPVLTPSPYLTRYDDGPGEIFGPIK
CEIQYKLAMRYGGGLKCLEIQRDSIVYAADSAPIIQVSTLETTDPNKLWKVSSKQYDLRE
VTWFLDHSSLISRLYFDVKIDTFFWMSTDGRVYANIGVSSNTNTKSLFGLCVHNPVDLNK
SDNDKDINEDLESKLREKKATVLSTNARFSLLYVGTADGTVYAYEIRDFGRQYVQTHSFK
YSASSGKVNHIATTGDGHQVMVGYDDGWATLSPYLNLCCASSETEYFNFGLSCGFWDRDS
SSFYGLGSKNFSSTGEAEGTGLSTPIIAESLKENDEFFAMEKENVDIQYLSQNDNTNDVL
YSITDSKQFISTIYILPFLKSTIVSSVQSTLQVCGAQTSDRLYISKSYEFCSSVKNNFGI
DFWDQVEYPQPYVASEWPIRYVSIKDDGSLIAIAGLHGLAIYVCSKKTWFLYKDANMEQL
ISVTCPMIWCSQFLLAGVVCESNFELHLYKAKGPLDDRENLAKLSFTSTIVTMSVCDEYS
LVVYTADNFLHHIRFDINELGRLELDYLTSVNFAPIFTTPSRVRSITLLLPKDLANIQPS
DLLFYAVLLVLINGKLVLLSLKKQHSKELLYQCSMLAGDVEFYFINGSQEIPSLFHSIWI
MTGKGLKLWLSFSEILSSVLINTKNLIDGLPKFLNTSKRVSLENFHRLSVEDLRSPSFVY
KNGVDCNFDNTHLAKLIKNVNISEKFQKECIDLESQGCLLTVLSNYGLLLTAYTQGHKNL
VNKMEYAHIQIGVYPFLPEIVRALLLLDKREQAIDLVKTYGHLHYINFVLEKLLSSSLLT
YNSSQRDKLLYEVSLLFKDLQEFTTFKIVLGCLRKTEAEYWPMIFKYFGEPKDLMKKCLE
TEDVKSAAECLIIWQIHQGSASCASTFLSIYEMALKIKNWDVCTELSSYLVSLDPEKRLL
KTALELLDEGPDSKDIRLYDQFNNLMKEVDKY
NT seq 3159 nt   +upstreamnt  +downstreamnt
atgtacttccttcatggaacacctcagagaatacaattgtcctccagagcaatacaaata
tgtcgaatccctaaagtgtcgttcttcgttgttttgactgaaaccgagattttaatatat
caaattcgacccttgacactcatatcaaagataacaaagtctcagaacttatttgaacgt
catggaaagaacaaaaaaatagctgttaactctgaatacggaattatagcggttgcaact
gaaaagaactatgtagctgtctatcatttcactttaaatgcttccaagcctgtactaacg
ccaagtccttatttaactcgatacgatgatggacctggcgaaatatttgggcctataaag
tgtgaaatccaatacaagcttgctatgcgatatggaggtgggcttaaatgcctggagatt
caaagggactccatcgtttatgctgcagattctgcaccaattattcaggtttcaacgctg
gaaacaactgaccctaataagttgtggaaagtgtcaagtaaacagtacgatttacgagaa
gtcacttggtttctggatcattcttctctcatatctcgactctatttcgatgttaaaatc
gacactttcttttggatgtcaactgatggaagagtttatgccaatatcggtgtttcttcc
aacacgaatacgaaaagtctgtttggcctttgcgtacataaccctgtagatttgaataag
tcagataatgacaaggacattaatgaggacctggaatccaagcttagagaaaagaaggcg
actgttttatctacaaatgccagattttctcttttatatgttggtaccgccgatggaact
gtgtatgcttatgaaatacgagatttcggtcgccaatatgttcaaactcattcttttaaa
tattcggcaagctccggaaaggttaatcatattgctacgacaggtgatggccatcaagtt
atggttggatacgatgacggttgggctacactgtctccttatctcaacttgtgttgtgct
agtagtgaaactgaatattttaattttgggttatcctgtggcttttgggatagagatagt
tcttccttttatggactaggatctaaaaatttttcttctacaggtgaagctgagggaacg
ggattatctactccgattatcgccgaatccttaaaagaaaacgacgagttttttgctatg
gaaaaagagaacgttgatatccagtatttgtcacaaaacgacaatacaaatgatgtctta
tatagtattacggattctaaacaatttattagcactatttatattttaccttttttaaag
agcaccatagtttcaagtgtacaaagcaccttgcaagtttgtggagctcaaactagcgat
cggttatatatttcgaagtcatatgaattttgttctagcgttaaaaacaattttggcatt
gacttttgggatcaagttgagtatcctcaaccatatgttgcttctgaatggcctattaga
tatgtttctatcaaagatgatggaagtttgatagcaatcgctgggcttcatggattagct
atatatgtttgctcaaaaaagacctggttcttatataaagatgccaatatggaacaatta
atcagtgttacttgtccaatgatttggtgctcacaatttttgctagccggtgttgtttgc
gagtccaactttgagctacacctatacaaagcaaaagggcctttagacgatagagaaaac
ttggctaaattatcgtttacttcaacaattgtgacaatgtcagtctgcgacgaatattct
ttggttgtctatacagctgataatttcctccatcacatcagattcgatataaacgaatta
ggaagattagaactcgactatttaacatccgtaaattttgctccaatattcactactcca
tccagagttcgaagcataacgttattactaccaaaagaccttgcaaatattcaaccttct
gatttacttttttatgcagtccttctggttctcattaatggaaaacttgttttgttaagt
ctaaaaaaacaacattctaaagagcttttatatcagtgcagcatgctagcgggagacgtt
gagttttactttatcaatggaagtcaagaaatcccttcattatttcattctatatggatc
atgacgggaaagggacttaagctatggttatcttttagcgagatcctttcctctgttttg
ataaatactaaaaaccttatagatggccttccaaagtttctcaatacatcaaaaagagta
tctctagaaaattttcatcgtttatctgttgaagacctcagatcgcccagctttgtctac
aaaaatggggttgattgtaactttgataacacacatcttgctaaattgattaaaaatgta
aatatttctgaaaagtttcaaaaggaatgtatagatctggaatctcagggatgtttgctg
actgtattaagcaattatggacttctattaactgcttatacccagggtcataaaaactta
gttaataagatggaatacgctcatatccaaataggtgtttatccattccttccggaaatt
gttcgagcactattactgttagataaacgtgagcaagctattgacttagtcaagacatat
gggcacttgcattatatcaattttgtgttagaaaaattactttcttcatcattattgacc
tacaactcatcacagcgagataaattgctttatgaagtatccttattatttaaagacttg
caagagtttaccacttttaaaatcgttctgggttgcctgcgaaaaactgaagctgaatac
tggccgatgatatttaagtatttcggagaaccaaaagacttaatgaaaaagtgtttagaa
acagaagatgttaaaagtgccgcagagtgtttgataatatggcagatccatcagggttca
gccagttgtgcttctacctttctaagtatatacgaaatggctttaaaaataaaaaactgg
gacgtttgtacggagttatctagctacctggtgagtctggatcccgaaaaacgtttactg
aagacagcgctggaacttctcgatgaagggcctgattccaaggacattcgtctttacgat
caatttaacaatttgatgaaagaagtggataaatattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (41)   

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