KEGG   Schizosaccharomyces pombe (fission yeast): SPAC227.08c
Entry
SPAC227.08c       CDS       T00076                                 
Symbol
yth1
Name
(RefSeq) cleavage and polyadenylation specificity factor complex subunit Yth1
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SPAC227.08c (yth1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spo03021]
    SPAC227.08c (yth1)
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPAC227.08c (yth1)
Transcription machinery [BR:spo03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     SPAC227.08c (yth1)
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SPAC227.08c (yth1)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_4 zf-CCCH_2 YgbA_NO
Other DBs
NCBI-GeneID: 2541506
NCBI-ProteinID: NP_592962
PomBase: SPAC227.08c
Ensembl: SPAC227.08c
UniProt: Q9UTD1
Position
I:complement(510410..511433)
AA seq 170 aa
MTDYIKDKAIAADFSSVQFRFDNYLKQNFNFGRSALLNSGNGRDSGSKMGSVVCKHWLRG
LCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQVGVCAWYNMGFCP
LGPICRGKHVRKPRPCPKYLAGFCPLGPNCPDAHPKHSEPPHPPQKRKDW
NT seq 513 nt   +upstreamnt  +downstreamnt
atgactgattatatcaaagataaagctatagcagctgatttttcttcagttcaatttcgt
tttgataactatttaaagcaaaattttaatttcggaaggtctgccttgctaaactctgga
aatggacgcgattctggatcgaaaatgggtagcgtggtttgcaagcattggcttcgtgga
ctttgtaaaaaaggtgaacagtgtgattttttacacgagtacaatttaaaaaagatgcct
ccatgtcacttttatgcagagcgcggctggtgttctaatggcgaagagtgtttatatctc
catttggatcccagtaaacaagttggtgtctgtgcctggtataatatgggattttgtcct
ttaggacctatatgtcgaggcaaacatgtacgaaaaccaaggccttgcccaaaatattta
gctgggttttgtccgctaggccctaattgcccagatgctcatcctaaacactctgaacct
ccgcatcctcctcaaaagcggaaagactggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (43)   

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