KEGG   Schizosaccharomyces pombe (fission yeast): SPAC23H4.12
Entry
SPAC23H4.12       CDS       T00076                                 
Symbol
alp13
Name
(RefSeq) MRG family Clr6 histone deacetylase complex subunit Alp13
  KO
K11339  mortality factor 4-like protein 1
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    SPAC23H4.12 (alp13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:spo03036]
    SPAC23H4.12 (alp13)
   03400 DNA repair and recombination proteins [BR:spo03400]
    SPAC23H4.12 (alp13)
Chromosome and associated proteins [BR:spo03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TIP60 complex
     SPAC23H4.12 (alp13)
    NuA4 complex
     SPAC23H4.12 (alp13)
DNA repair and recombination proteins [BR:spo03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     SPAC23H4.12 (alp13)
SSDB
Motif
Pfam: MRG Tudor-knot Mating_C Presenilin
Other DBs
NCBI-GeneID: 2541858
NCBI-ProteinID: NP_593394
PomBase: SPAC23H4.12
Ensembl: SPAC23H4.12
UniProt: O13953
Structure
Position
I:complement(1587022..1588751)
AA seq 337 aa
MAVSYKVNERVLCFHGPLLYEAKIVDTEMKGDVTTYLIHYKGWKNSWDEWVEQDRILQWT
EENLKTQKELKNAAISTRQKPTSKKSASSTSKHDSTGVKTSGKRSRESSTVTVDGDSHEL
PSRIKTQKSESPIPQQVKRDGTTDAKNEETTKPENNEKDDFEEEPPLPKHKISVPDVLKL
WLVDDWENITKNQQLIAIPRNPTVRAAIAAFRESKISHLNNEIDVDVFEQAMAGLVIYFN
KCLGNMLLYRFERQQYLEIRQQYPDTEMCDLYGVEHLIRLFVSLPELIDRTNMDSQSIEC
LLNYIEEFLKYLVLHKDEYFIKEYQNAPPNYRSLVGV
NT seq 1014 nt   +upstreamnt  +downstreamnt
atggccgtgtcatataaggtgaatgaacgtgtactatgctttcacggcccgttactctat
gaggctaaaattgttgatactgaaatgaaaggtgatgttaccacgtacctgattcattat
aaaggatggaaaaacagttgggatgaatgggttgaacaagataggatactacaatggaca
gaagaaaatttaaagactcagaaagagttaaaaaatgccgctatctctacgagacaaaaa
ccgacttctaaaaagtccgcatccagcacttcgaaacatgactcaactggagttaaaaca
tcaggaaagaggtctcgagaatcgagcaccgtaacggttgatggcgattcacatgaattg
ccttcacgtataaaaacccaaaaatcagagtctccaattcctcaacaagtgaaacgcgat
ggaacaaccgatgctaaaaacgaggaaactactaagcccgagaataacgagaaagacgat
tttgaggaagagccaccgcttccaaaacacaagattagtgtcccggacgttctaaagcta
tggcttgttgatgactgggaaaacattaccaaaaatcaacagttaatagctataccgcgg
aatcccaccgtccgggctgctatagcggccttccgagaatccaagatttctcatttgaac
aatgaaatagacgttgatgtttttgaacaagcgatggctggtttggttatatactttaat
aagtgcttgggcaatatgctgctgtatcggtttgaacggcagcaatatttagaaattcgg
cagcaatatcctgatactgaaatgtgtgatttatatggcgtcgaacatttaattcgcttg
tttgtaagccttcctgaattgattgaccggactaatatggattcacaatccatcgagtgt
ttgttgaattacattgaagaattcttgaagtatctcgttctacataaagatgaatatttt
attaaagaatatcaaaacgcccctccaaactatagatctttggttggtgtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (4)   
   Pfam (4)   
All databases (63)   

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