KEGG   Schizosaccharomyces pombe (fission yeast): SPAPJ698.03c
Entry
SPAPJ698.03c      CDS       T00076                                 
Symbol
prp12
Name
(RefSeq) putative U2 snRNP-associated protein Sap130
  KO
K12830  splicing factor 3B subunit 3
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPAPJ698.03c (prp12)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spo03021]
    SPAPJ698.03c (prp12)
   03041 Spliceosome [BR:spo03041]
    SPAPJ698.03c (prp12)
   03036 Chromosome and associated proteins [BR:spo03036]
    SPAPJ698.03c (prp12)
Transcription machinery [BR:spo03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     SPAPJ698.03c (prp12)
Spliceosome [BR:spo03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    SPAPJ698.03c (prp12)
 Complex B
    SPAPJ698.03c (prp12)
 Complex C
   U2 SnRNP specific factors
    SPAPJ698.03c (prp12)
Chromosome and associated proteins [BR:spo03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     SPAPJ698.03c (prp12)
    TFTC complex
     SPAPJ698.03c (prp12)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 2543278
NCBI-ProteinID: NP_594414
PomBase: SPAPJ698.03c
Ensembl: SPAPJ698.03c
UniProt: Q9UTT2
Position
I:complement(4037950..4041848)
AA seq 1206 aa
MDTFPSLFLYSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKVDATDGRMNCIL
NQNCFGIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRR
VVPGEYLAIDAKGRAAMIASVEKNKLVYVLNRDSEANLTISSPLEAHKANNICFHLIGLD
TGYANPIFAALEVDYSEIDHDSTREAFTSSEKVLSYYELDLGLNHVVKRWSKVVDRNSYM
LIPVPGGNDGPSGTLVISNGWISYRHLQKAFHQIPILRRQAASANAISTPWNQVNSNSAN
DGPLIVSAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNI
LKTGFLFVATEFGNHQLYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLS
LVEEIPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELPGA
PIAIWTLKLNQTDVYDSYIILSFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMGRDS
LVQIHPKGIRYIRANKQTSEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEMSDDVEGG
QLNEYQERKTLTANVTSLALGPVQEGSRRSNFMCLACDDATVRVLSLDLYTTLENLSVQA
LSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYLRTVIDVTSGQLLDTRTRFLGPRAVKIY
PITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQCPEGIVAIQKNTL
KIFTVDSLQDDLKSDIYPLICTPRKIVKHPNFPVLYILQSERNFDSFKYAQENGDVGSSY
TKEKQNEHTSKSWVSFISVFDMISKKIIHESPLGDNEAAFSMTAAFFKNRDEFFLVAGSA
TNMDLECRTCSHGNFRVYRFHDEGKKLELISHTEIDGIPMALTPFQGRMLAGVGRFLRIY
DLGNKKMLRKGELSAVPLFITHITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIH
RWTTTNVLVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLD
LMAHFFTNDIPTSLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLRK
ECPPLAGRDHLAYRSYYAPVKCVIDGDLCEMYYSLPHPVQEMIANELDRTIAEVSKKIED
FRVRSF
NT seq 3621 nt   +upstreamnt  +downstreamnt
atggacaccttcccttctctgtttctatattccttaacaatacagaatagtaattatgtt
caaagttcgtgtgccgcgtccttgtctggtaaaaaggcacaggagatagtaattgctaca
gaatcaaggttgcttatatataaagttgatgcaactgatgggagaatgaattgtatttta
aatcaaaattgttttggtattattcgaaatgttgctcctttgagattaactggttttaaa
cgcgattatctcgtagtcacgtcggattcaggacgaataaccattttggaatataacgtt
gaaaaaaataaattagtgccaatataccaggaaacttttggaaaatcaggaattcgaaga
gttgttcctggtgaatacttagccatagatgcgaaggggagggccgctatgattgcatct
gtggagaaaaataagctggtttacgtactaaatcgagattcagaggctaacctaacaata
tcttcaccacttgaagctcataaagctaataatatatgtttccatttaattgggttagat
actggttatgctaatcccatcttcgctgccttagaagtcgactacagcgaaatagaccat
gactcaactagagaagcatttacatcttcggaaaaggttttatcatattacgaattggat
ttgggattaaaccatgttgtcaaaagatggtcgaaggtcgttgacagaaattcttatatg
ttaatccctgttcccggtggtaatgatgggccctccggtacactagtaatatctaacgga
tggatttcctaccgtcaccttcagaaggcatttcatcaaattcccattttgcgtcgtcaa
gctgcatcggcaaacgccatatccactccatggaatcaagtcaattcaaactctgcaaat
gatggtcctttgattgttagtgctgttctccataaaatgaaaggatcgtttttttatctt
ttacaaactggtgacggggatttgctgaagctgacaatcgagcatgatggtcaagggaat
gttgttgaactaaggttaaaatattttgatacagttcccctggcagttcagttaaatatt
ttgaaaactggttttctattcgttgccacggaatttggaaaccaccaattgtatcaattt
gagaatttaggtattgatgatgatgaattggaaattacttctttagatttccaagcccag
gacaatgaagtcggtacaaaaaatgtgcattttggagtccgcggtctacagaacctttct
ttggttgaagaaataccaagcctatattcgttaacagatacgttacttatgaaggcgccc
tcgtcaggcgaagctaatcaattatatacagtatgtggaagaggctcaaactcttctctg
cgtcagttgagaaggggtttagaaaccacagagatcgtagcgtcagaacttcccggtgcc
cctattgcaatttggacattgaaattaaatcaaaccgacgtttatgactcttatattatt
ctttcgtttacaaatggaaccttggttctttctattggagagacggttgaagaaatatct
gatagtggatttttatcatcagtctcaactctaaatgcgaggcaaatgggaagggattcg
ttggttcaaattcatcctaaaggtattcgttatattagggctaataagcaaacaagtgaa
tggaaattacctcaggatgtgtacgttgtacagtcggcaattaatgatatgcaaatagtt
gttgctttaagcaatggagaactcgtttattttgaaatgagtgatgatgttgaaggaggt
cagctcaacgaatatcaagaaagaaaaacgcttactgctaatgtaacttctttggcttta
ggccccgtacaagaaggatcaagaagaagtaattttatgtgcttagcatgtgacgatgct
acggtgagggtgttgtctctcgatttgtacacaaccttagaaaatttgagtgtacaagcc
cttagttctcctgccaattctttatgcataattccgatgaacgtaaatggtgtgagtact
ctctatttacatataggtttaatgaatggtgtctatttacgaactgttatcgacgttaca
tccgggcaacttttggatacaaggactagattcttgggtccacgagctgtcaagatctat
ccaataaccatgaaaaatcaaaatacggtgttggcggtgtcttctcgtaccttccttgca
tatagttatcaacaaaacttgcaactatcaccaatcgcttattctgcaattgatcatgct
tcatcttttgcaagcgaacagtgtccagaaggtattgtagcgattcaaaaaaatacttta
aaaattttcacagtcgatagtctgcaagatgacttaaaatctgatatttatccgttaatt
tgtacccctcgaaaaatcgttaaacatcccaactttccagttttgtacattttgcaaagt
gaaaggaactttgactcatttaaatatgctcaagagaatggagatgtgggttcttcgtat
acgaaggagaagcaaaatgaacacacatcaaaatcttgggtgtcatttatatctgtattt
gatatgatatctaaaaaaataatccatgaaagtccgctgggcgataacgaagctgctttt
agtatgacagccgcttttttcaaaaatagagatgaattctttttggtagctggttctgcc
actaatatggatcttgaatgtcgaacctgttctcatggaaactttcgagtataccggttc
cacgatgaaggtaaaaagcttgagttaatcagccatacggaaatcgatggaattcctatg
gctttaactccctttcagggacgtatgctagctggagttggacgctttttacgaatttat
gatttaggaaacaaaaaaatgcttcgtaaaggtgagttgtctgctgtaccactatttatt
acacatattacagttcaagctagtaggatagtggttgcagattcgcaatactcagttaga
ttcgttgtctataaacctgaggataatcacctactaacttttgctgatgatactattcat
cggtggactactacaaatgtccttgtcgattatgatactttagcagggggggataaattt
ggtaatatttggcttttacgctgccccgaacatgtttctaaactagctgatgaagagaat
tctgaatctaaattaattcacgaaaagccctttttaaattccacacctcacaaattggac
ctaatggctcatttctttacaaatgatattcctacttcgcttcaaaaggtccaattggtt
gaaggagctcgagaagttttgttatggaccggtcttctgggtactgttggagtatttacc
ccttttattaaccaggaagatgttcgattttttcaacaactggaatttttgttgcgaaaa
gaatgtcctcctttggctggaagggatcatcttgcttatcgtagttattacgctccagtc
aaatgtgttatagatggtgatctctgcgagatgtactattcgttacctcatccagttcag
gagatgattgccaatgaactcgatagaacaattgcagaggtttcaaaaaaaatagaagat
tttcgtgttcgtagtttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (47)   

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