KEGG   Schizosaccharomyces pombe (fission yeast): SPBC1289.07c
Entry
SPBC1289.07c      CDS       T00076                                 
Symbol
rpc40
Name
(RefSeq) DNA-directed RNA polymerase I and III subunit Rpc40
  KO
K03027  DNA-directed RNA polymerases I and III subunit RPAC1
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SPBC1289.07c (rpc40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spo03021]
    SPBC1289.07c (rpc40)
Transcription machinery [BR:spo03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     SPBC1289.07c (rpc40)
  RNA polymerase I system
   RNA polymerase I
     SPBC1289.07c (rpc40)
SSDB
Motif
Pfam: RNA_pol_L RNA_pol_A_bac
Other DBs
NCBI-GeneID: 2539663
NCBI-ProteinID: NP_596831
PomBase: SPBC1289.07c
Ensembl: SPBC1289.07c
UniProt: O94616
Structure
Position
II:complement(4395913..4397207)
AA seq 348 aa
MAAVDRSRTEISVLSDRVTDVGSVDFPGYYFDEDNIWDLDKFKKNLKVSITSLDQETMVF
EISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFK
WFQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQG
RQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTI
HILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARVADVRKDTVSRECLRHPEFADKVQ
LGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKCLAVKSSLQNISSD
NT seq 1047 nt   +upstreamnt  +downstreamnt
atggcagcggttgacagatcaaggacagaaatctctgtcctttctgatcgtgttacagat
gtaggaagtgtagattttccaggttattattttgatgaagacaacatctgggatcttgat
aaatttaaaaaaaatttaaaagtttcgattacgtctctcgatcaagaaacaatggtattt
gaaatttctggaattgatgcatccattgcaaatgcatttaggaggattttaatcgccgag
atcccaactcttgcatttgagttcgtgtatatcataaacaatacgagcataatacaagat
gaggttttgtctcacagaataggtcttgtacctatatctgctgatcctgacatgtttaaa
tggtttcaacatcctctgccaggacaagaggcaactcatactgattacgatactgttgtc
ttttcccttaataagaaatgcgagtttaataagaatgccgctacagatgaaaaagatcca
aagagactttacgttaactctgaggtttattcgggtgatctaatttggaaaccgcaaggt
cgacaggaagagcgatttgctgacaatcctatacgagtagtcaacccagatattgttgtt
gcaaaattgcgtcctggccaggaaatcgatttagaagctcatgcaatcttaggtattgga
caagaccatgctaagttttctcctgttgctactgcctcctaccgcttattgcctactata
catatcttgtctcctattgaaggtgaagatgcagttaaatttcaaaaatgcttccctaaa
ggagtcatcgagcttgaagaaggacctgatggtaaaaaacaagcccgtgtagcagacgtt
cgaaaagacaccgtatcccgcgaatgcttgagacatcccgaatttgcagataaggtgcaa
ttaggccgcgtacgcgatcattatttgttttctgttgaaagcaccggtattatgaagccc
gatgtcttgttcattaaaagcattgcagtcctaaaatcgaaatgtctagccgtaaagtct
agtcttcagaatatttcttctgactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (3)   
   PDB (3)   
Protein domain (2)   
   Pfam (2)   
All databases (48)   

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