KEGG   Schizosaccharomyces pombe (fission yeast): SPBC13E7.03c
Entry
SPBC13E7.03c      CDS       T00076                                 
Name
(RefSeq) putative RNA hairpin-binding protein
  KO
K27407  RNA-binding protein VTS1
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:spo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPBC13E7.03c
   04131 Membrane trafficking [BR:spo04131]
    SPBC13E7.03c
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     SPBC13E7.03c
Membrane trafficking [BR:spo04131]
 SNARE
  SNARE associated proteins
   Others
    SPBC13E7.03c
SSDB
Motif
Pfam: SAM_2 SAM_1
Other DBs
NCBI-GeneID: 2540161
NCBI-ProteinID: NP_596258
PomBase: SPBC13E7.03c
Ensembl: SPBC13E7.03c
UniProt: Q9P6R7
Position
II:complement(3041640..3046042)
AA seq 713 aa
MEVVEGRRKTCLDVVDSPSSRQKQTIAVSLVDGKNYPTRFLNSRTIDKLKQELNTSNLST
GEMSTNETLKNAQEVAGKLLSEENEDSISEHFDEYLGADKPGISFLTRLKTLESWFQSLS
LQDRLTTLRTLLHHLPSQEISTLLSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSSLPS
LTTKSNLSGNLNMVTPASTQGPAFSSKHGFSNALSTASPIPVRTSSVSSTYLTQDREASS
KNCLSKALAFSSIEPPASSASTSPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLL
IAASKKSLPSNSTPSKPNTSFFETPHNNIWDSRDRGAFSAPPAPFFPLGFSPHLNDESSR
SRWSNISYSPPPPPPPPELLNHSPKSRPLGDKPYLFYRNNQIGPRTRTEGRSSITEGKPF
LSSSLRFEHVPSANDLNSVVNARVEKSTGQPSTPLNRQHYFNELPHSTTPVTLPSLIHGS
EIDRRRSGFCLNNFNSTPPFQPYHYEIGSGLPQQMHATNTILTNPIDPNSNISTPVGMHL
CTLPYTYQPFSSVEKIETPPNNSKNQTYRRSSRGSNKTRKSISHSKNTDKHVGNELPQDI
PSWLRSLRLHKYTNNLKDTDWDALVSLSDLDLQNRGIMALGARRKLLKSFQEVAPLVSSK
KMNENLKAAKNQSSESLTSFKGHTDSEDLPSGSMSNEISSNSTKQDVSSSSMD
NT seq 2142 nt   +upstreamnt  +downstreamnt
atggaagtggttgaaggaagacggaagacgtgccttgacgttgttgattctccatcttca
cgtcaaaaacaaactatagctgtctcgttggtagatggtaaaaactatcctacgcgattt
ttaaatagtaggaccatagataaattgaagcaagaattaaacacttctaatctgtcgact
ggagaaatgtctactaacgaaaccttaaaaaatgctcaagaagttgccggtaagcttcta
tccgaagagaatgaagattcaatatcggaacatttcgatgagtatttaggagctgataag
cctggtatatcctttttgactcgtctgaaaactcttgaaagctggtttcaatccttaagt
ctccaagatcgactgacgaccttacggactcttttgcatcaccttccttctcaagaaata
tctacacttctgtcgtctagccttacgtcctctccttcaaactctggcttatctttagac
aaatctctcccttcgtcccctaaaggtgactcaccttccctttcaagttcacttccttca
ttgaccacaaaatccaacttgtctggaaatttgaacatggtgactcccgcgtccacccag
ggacctgcattttcttcaaagcatggcttttctaacgctctttctacggcttcgccaatt
cctgttcgtacatcttcagtatcatctacttacctcacgcaggatcgtgaggcatcttcc
aaaaattgcctttctaaggctttagcattttcctccattgagccgcctgcctcttctgct
tctacgagtcctcggaatactcctaccccttctaataatgggacttcaattaatgctaat
gtaacatcttctttaaccagcaattccaccggcaaaacatccaagaccactgatctttta
atagctgcatctaaaaagtctttaccgtcaaattcaacaccatcaaaacctaatacatct
ttttttgaaactcctcataataatatttgggattctcgtgatagaggagctttttcagct
cctcctgctcctttttttccacttggattttcaccacatttgaatgatgagtcttctcgt
tcgagatggagtaatatatcttattctccgcctccaccaccacctcctcctgaattatta
aaccattctccaaagtctcgccctttaggcgataagccttatctgttttaccgtaataac
caaatcggacctcgaactcgaactgaaggaagatctagcattacagaaggtaaaccgttt
ttatcatcttcccttcgttttgagcacgtaccttctgctaatgacctaaattctgtagtc
aatgctcgtgttgagaaatcaactgggcaaccatcgacgccgttgaatcgtcaacattat
ttcaacgaacttccacattcgactactccggttacattaccctcgttgattcatggttct
gaaattgataggagacgaagtggtttttgcttgaacaatttcaattcaactcctcccttt
cagccctatcattacgaaattggttctggtttacctcaacagatgcatgctaccaatacg
attttaacgaatcctatagatcctaattctaatatctcgacacccgtaggaatgcacctt
tgcacccttccttacacttatcaaccgtttagttcagttgaaaaaatagagactccaccc
aataattcaaagaaccaaacataccgtagaagctcacggggatctaataaaaccagaaaa
tcgatttcacattctaaaaacacagacaagcatgttggtaatgagcttccgcaagatatt
ccgagctggctcagaagtttgcgcctacacaagtataccaataatttaaaggatacggat
tgggatgctttggtttcgttaagtgatctcgatttgcaaaatcgaggcatcatggcactg
ggtgctcgtcgtaaactgttgaaaagttttcaggaagttgcaccgctagtatcttcaaaa
aaaatgaatgaaaatttaaaagcggcgaaaaaccaaagttcggagtctttaacgagcttc
aaaggtcatactgactcggaggatcttccaagtgggagcatgtctaacgaaataagctcg
aattcaactaaacaggatgtttctagttcatcaatggactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (39)   

Download RDF
DBGET integrated database retrieval system