KEGG T00076: SPBC17D11.02c

Schizosaccharomyces pombe (fission yeast): SPBC17D11.02c

Entry

SPBC17D11.02c CDS T00076

Gene name

hrd1

Definition

ubiquitin-protein ligase Hrd1, synviolin family

Orthology

K10601

E3 ubiquitin-protein ligase synoviolin [EC:6.3.2.19]

Organism

spo Schizosaccharomyces pombe (fission yeast)

Pathway

spo04120	Ubiquitin mediated proteolysis
spo04141	Protein processing in endoplasmic reticulum

Class

Genetic Information Processing; Folding, sorting and degradation; Protein processing in endoplasmic reticulum [PATH:spo04141]
Genetic Information Processing; Folding, sorting and degradation; Ubiquitin mediated proteolysis [PATH:spo04120]

SSDB

Motif

Pfam:

zf-rbx1 zf-RING_2 zf-C3HC4_3 zf-C3HC4 zf-C3HC4_2 zf-RING_5 zf-RING_UBOX zf-Apc11 TBPIP zf-RING_4

Other DBs

NCBI-GI:

NCBI-GeneID:

GeneDB:

UniProt:

Position

II:complement(join(3306554..3308563,3308607..3308630))

AA seq 677 aa
MKFILYVLASLVLFGLSVLLSLYSSANVYSATVMISQSPVHITIGLNVCLCLFFAIANAL
KTLLFGSLQTFELELLYEQFWITLTEIMLAITVFREAISISFFMLLSTLMFARVFHSICS
FRTERLQIQLTDQRFHIFSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSV
LLLNLTIEASKLCIYLYEARHLDQVWDEKSTYLFRLEVCRDGLRLLAYSLLFMYQFPYVS
VPIYSIRQMYTCFYSLFRRIREHARFRQATRDMNAMYPTATEEQLTNSDRTCTICREEMF
HPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQTCPICRRSVIGNQSS
PTGIPASPNVRATQIATQVPNPQNTPTTTAVPGITNSSNQGDPQASTFNGVPNANSSGFA
AHTQDLSSVIPRRIALRDGWTMLPIPGTRRIPTYSQSTSTTNPSATPTTGDPSNSTYGGP
QTFPNSGNNPNFNRGIAGIVPPGWRLVSSNTQSLSTNSAMTSLYQNASSADNNLGSSLPN
VVPLSRGLTQSNETSNTFPAASSNISSQLRELHTKIDELRETVSNFRADYNSIRTSLNQL
EAASGINERIQTTSADSLLNSNGMSGTEGFENTQTSITTNDNQSSILTSSDQTSPFATDE
DRQNSRNVQLETVDENF

NT seq 2034 nt +upstreamnt +downstreamnt
atgaagtttatactatatgtgttagcttccttggtgctgtttggactgtcagtcttgttg
agtttgtacagtagtgcaaacgtgtactcggcgacagtaatgatttctcaaagtcctgtt
catataacaattggactgaacgtttgtttatgtctgttttttgcgattgccaatgcctta
aaaacattattgtttggttcgcttcagacattcgaacttgagcttttatatgaacaattt
tggataacccttactgaaataatgcttgcgatcactgtttttagagaagccatatctatt
tctttctttatgttgttaagtactttgatgtttgctcgggtgtttcattccatatgttct
tttcgcacagaaagattgcagattcagcttacagatcagcgttttcatattttcagtcgc
ctaacttgcgcatactttgtactttctatactggatgcatctcttatttacctttgtttt
acgagcgagcatcttggcgataaatcgacacgtatgcttttcgtatgtgaattctcggtc
ctccttttaaatctcacaattgaggcatctaagctttgcatatatttgtatgaggctaga
cacctcgatcaggtttgggatgaaaaaagtacttatcttttccgacttgaggtttgtcga
gatggtttacgccttcttgcatacagccttttattcatgtatcaatttccctatgtctca
gttcctatttattccatccgtcaaatgtacacatgtttttactcgttgttcaggcgtata
cgtgagcatgcgcgtttccgacaagcaactcgcgatatgaacgccatgtatccaactgct
actgaagaacagcttacgaattcagatagaacatgtactatttgtagggaagaaatgttt
catccagatcatcctccagaaaacaccgacgaaatggaacctctacctagaggtttagat
atgactcctaaacggcttccctgtggccatattttacatttccattgccttagaaattgg
ctagaaagacaacaaacatgtccaatttgtagaagatccgttattggaaatcaatcttcc
ccaacgggaattcctgcaagtcccaatgttcgagctactcaaatcgcaacccaagttcct
aacccgcaaaacactcctaccacaactgcagtaccaggcatcactaactcttctaatcaa
ggagaccctcaggcatcaactttcaatggagtgccaaatgcgaatagtagtggatttgca
gctcatactcaagatctttcgtcagtgatcccaaggagaattgccttacgtgatggttgg
actatgcttccaattcctggaacgcgtcgtattccgacttattctcaatccacatcaacg
acaaatcctagtgctacgcctactactggggatccatcgaattccacgtatggtggccct
caaacatttccgaattctggaaataatccaaactttaaccgtggaatagcaggaattgtc
cctccgggatggcgactagtatctagcaatactcaatctctatctaccaactcagcaatg
acatctttatatcaaaacgcatcatcagcagataataatcttggctcctctttacccaac
gttgtaccattgagtagaggattaacacagtcgaatgaaacgtctaatacgtttcccgct
gcttcatctaatatatcttctcagcttcgtgaacttcataccaaaattgatgaattacga
gaaacggtttctaactttcgtgctgattacaatagtatacgtacatctttaaatcagtta
gaagctgcaagtggtattaatgaaaggatacaaactacttctgctgattcactattaaat
tccaatggtatgagtgggactgaaggatttgagaatacgcagacttccattacaacgaac
gacaatcaatcatcgatcttaaccagttcagatcaaacatccccatttgcaactgatgaa
gatcgacaaaactcacgaaatgtacaattagaaactgtggatgaaaatttttga

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   GENEDB-SPO (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (22)   

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