KEGG   Schizosaccharomyces pombe (fission yeast): SPBC19C2.08
Entry
SPBC19C2.08       CDS       T00076                                 
Symbol
prp38
Name
(RefSeq) putative U4/U5/U6 small nuclear ribonucleoprotein complex subunit PRP38
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPBC19C2.08 (prp38)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:spo03041]
    SPBC19C2.08 (prp38)
Spliceosome [BR:spo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    SPBC19C2.08 (prp38)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    SPBC19C2.08 (prp38)
SSDB
Motif
Pfam: PRP38
Other DBs
NCBI-GeneID: 2540453
NCBI-ProteinID: NP_595693
PomBase: SPBC19C2.08
Ensembl: SPBC19C2.08
UniProt: Q9UUD2
Position
II:1690079..1691223
AA seq 210 aa
MADFLARDYRSQGEAAHEMLPTFLIGKILRERIVDSIYWKEQCFGLNACSLVDRAVRLEY
IGGQYGNQRPTEFICLLYKLLQIAPEKEIIQQYLSIPEFKYLRALAAFYVRLTWDDVEVH
QTLEPLLRDYRKLRIRTNSEIRLTYLDEVVDDLLNAEVVCDISLPPLRSRLQLEDLDLLE
PLSSSSDEEDDDEEQISKLESNEGAVDRNI
NT seq 633 nt   +upstreamnt  +downstreamnt
atggctgattttcttgctagagattatcgctctcaaggtgaggcggcgcatgaaatgctg
ccgactttccttataggaaaaatcttgagagaacgcatagtagattctatttactggaaa
gaacaatgttttggattgaatgcttgttcattggtggatcgtgcagtacggcttgaatat
ataggtggtcagtatggaaatcaacggcccaccgagtttatctgtttgttatacaagctt
ttacaaattgcacctgaaaaagaaataattcaacagtacctatctattcctgaattcaag
tatttacgtgccctggctgcattttacgttcggcttacatgggatgatgtggaagtgcat
caaacgttggaaccgctgttaagagattatcggaaattaagaattcgtactaattctgag
atccgattaacatatctggatgaggttgttgatgatttgctaaatgccgaagtagtttgc
gatatttccctgcccccattgcgaagtcgactccaacttgaagatttggacttgcttgaa
ccactttcatcttcttcagacgaagaagatgatgatgaagaacaaattagtaaattggag
agcaatgaaggtgctgtagatcggaatatttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (20)   

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