KEGG   Schizosaccharomyces pombe (fission yeast): SPCC1620.09c
Entry
SPCC1620.09c      CDS       T00076                                 
Symbol
tfg1
Name
(RefSeq) putative transcription factor TFIIF complex alpha subunit Tfg1
  KO
K03138  transcription initiation factor TFIIF subunit alpha
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    SPCC1620.09c (tfg1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spo03021]
    SPCC1620.09c (tfg1)
Transcription machinery [BR:spo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIF
     SPCC1620.09c (tfg1)
SSDB
Motif
Pfam: TFIIF_alpha
Other DBs
NCBI-GeneID: 2539294
NCBI-ProteinID: NP_588467
PomBase: SPCC1620.09c
UniProt: O94416
Position
III:complement(2161195..2163190)
AA seq 539 aa
MDSQETKVFENVKQENPDEKKPKVEEPDSQNNASTQSQQKFLDFQLSWCPESERKTTKYH
LLKFHSNKAIDPSKSFVPPIKMQRRDPNAPSSSNGEQNAEQGSSSNVNIASIAPYGGAQN
MKQNAFKRKTRQVVKVDPQARRLQEEELSPWIMEDFEGKNTWVSTMEGGQSSAYVLFMFS
ENGFKVIPTDRFYRFNQRNNFQTLSIDEAEAKMNKKTPIPRWFMKKESEENLAEAGSASP
MYKLKTVPNARPVTGPRASGSDDELDYDEEFADDEEAPIMEGNEEDNKKLKDKIKKEMLT
ANLFGEADQDVDLEEENDRQMSREGKKLQRYLKLLEKNLAYESDEEDEDPYASSHDASSE
EEVLQEEEELQKREEKLKSRFSANASKTNTPRPLERTPSSVSPVKASSQLQSPNTSIQIR
PQEQLINKPGYIILRLSSEKLSRFANDFPRMVPSMGSTETSVGDQVEVVGDTTNVPIDDS
NLITEAEVMKALRAGPISIKDLVHLFQRKIRADNRNRLGIQKIIRKVARFENKLLVLKN
NT seq 1620 nt   +upstreamnt  +downstreamnt
atggattcacaagagacaaaagtttttgaaaatgtaaagcaggaaaatcctgatgagaag
aaacccaaagttgaggagcctgactcccaaaataatgcttcgacacaatcgcagcaaaaa
tttttggatttccagctttcatggtgtccagagagtgaaagaaaaacaactaaataccat
ttattaaaatttcactctaacaaagccattgatccttccaaatcctttgtgccacccata
aaaatgcaacgcagagaccccaatgctccatcttcgtcaaacggagaacaaaatgcagaa
caaggaagctccagtaacgtgaacatcgcttcaatcgctccttacggtggcgctcaaaac
atgaagcagaatgcctttaaaaggaaaactcgccaggtcgtcaaagttgatccacaggcc
cgcagactacaagaggaggagttatctccttggattatggaagattttgaaggaaaaaac
acatgggttagtacgatggaaggcggccaatcgtctgcatatgtattgttcatgttctct
gaaaatggttttaaggtgattccaactgatagattttatcgatttaatcaacgtaacaat
ttccaaacgctttcaattgatgaagcggaggcaaagatgaataaaaaaactccgattcct
cgctggtttatgaaaaaggagagtgaagaaaacttagcagaggcaggctctgcttcaccc
atgtataaacttaagacggttccaaatgcacgtcctgtaacgggaccgagagctagtgga
agtgatgatgaactagattatgacgaggaattcgctgacgatgaagaagcacctattatg
gaaggaaatgaagaagataataagaagttgaaagacaagattaaaaaggaaatgctaact
gccaatttgtttggtgaagctgatcaagatgtcgaccttgaagaggagaatgatagacaa
atgtcgcgtgaaggaaaaaagctgcaaagatacttaaaattgcttgaaaagaatttagct
tatgagagtgatgaggaagatgaggacccttatgcttcctcccatgatgcgtctagtgaa
gaagaagttttgcaagaagaagaagaattgcaaaagcgtgaagaaaaactaaagtctaga
ttttctgcgaacgcttccaaaactaatacaccaagaccactagaacgaacgccaagcagc
gtatctcctgtcaaagcttcatcgcaactacaatcacctaatacttctattcaaataagg
cctcaagaacaacttattaacaaacctggatatataattctccgcttatcaagtgaaaag
ttatcacggtttgccaatgactttccccgtatggtccctagcatggggtctacagaaacg
agtgtaggagatcaagtggaggttgtgggagatactacaaatgttccaattgatgattct
aatctgattacggaggcagaggtaatgaaggctttaagagctggtcccatttctattaag
gatctagttcacctgttccaacgcaaaattagagccgacaacagaaatcggttgggaata
cagaagatcattcgaaaggttgctcgatttgagaacaagctactcgttttaaaaaactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (27)   

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