KEGG   Schizosaccharomyces pombe (fission yeast): SPBC4C3.05c
Entry
SPBC4C3.05c       CDS       T00076                                 
Symbol
nuc1
Name
(RefSeq) DNA-directed RNA polymerase I complex large subunit Nuc1
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SPBC4C3.05c (nuc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spo03021]
    SPBC4C3.05c (nuc1)
Enzymes [BR:spo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SPBC4C3.05c (nuc1)
Transcription machinery [BR:spo03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     SPBC4C3.05c (nuc1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 2540873
NCBI-ProteinID: NP_596300
PomBase: SPBC4C3.05c
Ensembl: SPBC4C3.05c
UniProt: P15398
Structure
Position
II:3127776..3133199
AA seq 1689 aa
MNIAQPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKN
SVCATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFF
CRLKLLDYGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMR
IRDEFVAKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRK
EGFAKIFEIPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEVEGIDL
FEEDPNPLKNKSKSPIAHGAKYMTSTEVRNHLRRLFVKENVVLSRLYAHKRGKPASADMF
FLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIASLSKDSTVEVNPDEKEGL
ERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPGIKQILEKKEGLFRKHMM
GKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPG
ASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNG
DMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNAR
SEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPDE
TGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPGKYWSPDSE
EGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRG
FTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPIALLNANLEEVYRDDE
KLQGLDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLL
GQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLI
DTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFE
FSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALKKPYKYDPVLDKYPPSRYLGSVSEK
FQRAVDEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQ
SIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVSDKRA
SAFCKEVNKLVLSEVVRQVRVTEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEI
ESTFSNRFLKILNRIIKSYLAKSKQRKSGGKDDTVPEVGQALKPLEDIDEAPIEGRAQEA
LEDEDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKGSNKVEDVNMDEEEDEGFKSDE
SVSDFKERKLLEKQNTVSISERRELQLKTAKEILSNCKHLDFDYVNGEWATVELVFPINT
EKLLMVSLVEKACSETVIHEIPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEFYNEIS
MNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKA
FNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIF
TPVVDSPAN
NT seq 5070 nt   +upstreamnt  +downstreamnt
atgaatattgcacagccagtctcttcggagattaaaagtgtgaagtttgggatttacgat
gttgacgatgtcgaaaaaatatccgtcaaacaaatcgtaaatcccgttttgcttgacaat
ttaaatcaccctactaacggcggattatatgaccttgctttgggtccatatctaaaaaat
tctgtttgcgctacatgtcatttggatgaaagatactgccctggtcattttggtcatata
gtacttcctattcctgcatatcaccctctatttttttctcaaatgtacaatttattacgt
tcaacttgcttgtactgccatcatttcaagctttcaaaagtcaaggttcatcttttcttt
tgtagactcaagttgcttgattatggtcttttaaatgagtcagagatggtggagaatgtc
agtcttactgaggcaatcataaagaattctaacggcactccacttgaagatggaagtgac
agcgaggacagtggtcttggacacgatgatattgctaaagatgctgcaacacttatgcgc
attcgcgatgaattcgttgctaagtctattgctgactcacgccagaacgctcatatcgat
gctcagttgactacacttcttttacacgagaggaaaaaagttgtgcgtgccttctaccat
gccatttcatctcgcaaacaatgtgataattgccagtctttttcccctaactttaggaaa
gaaggctttgctaaaatattcgagattccattgagtggaaaaaatctccaatttatggag
caaaccggaaaaattcgttctgacgttcttcgtgatactagtaaaaagcatcatgaagat
gagggatatgatggagattctgattcgagtaatgaaagtgaagtagaaggaatagatctc
tttgaagaagatcctaatcctttgaaaaataaatcaaaatctccaattgctcatggagcc
aaatatatgacttctactgaagtccgtaaccatcttcgccgtctttttgtaaaagaaaat
gttgtcctttctcgtctttatgctcataaacgcggaaaacctgcctctgctgatatgttt
ttcctccaaaatattgctgttcctcctactcgcttccgtccagcttccaaaatgggcgat
gaagtacatgaaaatatccaaaatgaacttctgaccagaattttacaatcctcaatacaa
attgcttctctctctaaagactctacagttgaagtaaatcctgatgagaaagaaggcttg
gagcgtcgttctcgtgcttttgaactgttgattaacgcttttgttcaactacaacacgat
gtaaacagcctgattgatagtaataggaatcctagttctggaggacagagtagaacagta
cccccgggtattaagcaaattttggaaaagaaggagggtcttttccgtaagcatatgatg
ggtaaacgtgtgaattatgcagctagatctgtcatttcacctgacccgaacattgaaact
aatgaaatcggtgttccgccagtctttgctactaaactcacatacccagaaccagtaact
ctttacaactttaacgagatgagaaatgcggttattaatggtccccataaatggcctggt
gctagtcatattcaaaacgaagacggcactttaatttctttaatgcctttaacaattgaa
caacgcactgctttagccaaccagcttcttacacctcaaagcaatttaatatcttcccca
tattcttattctcgcttaataaatactaacaaaaaggtttatcgtcatgtcagaaatgga
gacatgttgatattgaaccgtcaacccacccttcataagccttcgatgatggctcataaa
gctcgtattcttccaggtgagaagacgattagaatgcattacgcaaattgcaactcttac
aatgctgatttcgatggcgacgaaatgaacatgcattttccacaaagtaccaatgcgcgt
tctgaggctcaatttattgcaaacacagactctcaatatttggtgcctacctctggtgat
cctttgcgcggtcttattcaagaccatgtcgtaatgggtgtttggcttacctgtaaagat
acattttatactcgagatgaatatcagcaacttctatttcaggctttaaagcctgatgaa
accggtatgtatgggcgtatcaaaactcttcctcctgccatacaacgtccgggtatatac
tggacaggtaaacaaataatatcttctgttttgctcaacctaaaacccagtgatcgtcct
ggtcttaatcttaaaagcaaagcaaaggttccaggaaaatactggtcacctgactcagag
gagggatcagtattatttgatgatggtgaacttttatgcggtattcttgataagtcctct
tttggtgcctcggcttttggcttagttcactcagttcatgaattgtacggtcctgacatc
gctggtcgcttgctttctgttttaagtcgtctattcactgcgtatgctcaaatgcggggc
tttacttgccgtatggatgatttgagacttgatgagcaaggtgataattggagaagacaa
ctattggaaaacggaaaatcctttggacttgaagctgccagtgaatatgttggcctttca
acagattcgccaattgcgcttttgaacgctaaccttgaggaagtttacagagatgatgag
aagttacaaggtttagatgctgctatgaaaggtaaaatgaacgggcttacttcctcaatt
atcaacaaatgtatccctgatggtttacttacaaaattcccctataatcatatgcaaact
atgaccgtttctggtgccaagggtagcaacgtaaacgtctcacagatttcttgtcttttg
ggtcaacaggaattagaaggacgtcgtgttcctcttatggtgagcggaaagtcacttcct
tcctttgttccatatgaaacttctgctaagtctggtggttttattgccagcagattttta
actggtatcgcccctcaggagtattattttcactgtatggctggccgtgaaggcttgatt
gataccgctgttaaaaccagtcggtctggttatcttcagcgttgtctgatgaagcatctg
gaaggtttatgtgtacaatatgatcatactgttcgcgattccgatggatctatcgtccaa
ttccattacggagaagattctttagatgtcacaaaacagaagcacttgacacaatttgag
ttttcagccaaaaattataaatccttaattcagaaatacaaggtcaaatctgtcttatcg
gcggttgattccgaaactgcatcctcttacgcgaagaaagcgttgaaaaagccgtacaaa
tatgatccagtattggacaagtatccccctagtcgatatttgggaagcgtaagcgagaag
tttcaacgtgctgttgatgaatatacccagaaaaatccggacaagttgattgcttcgaag
aaagagagcaagcttgatgattctcttcttaatgaatcaaagttcaaggcattgatgcag
ttacgttaccaacagtctctggttgatcctggtgaaagtgttggtgtattagctagtcaa
tcaatcggtgagccatctactcaaatgactttgaacacattccattttgctggattcggt
gctaagaatgtcacattaggtattcctcgtttacgtgagattatcatgaccgctagtgca
aatattcaaactcctacgatgactcttcgtttgaatgacggcgtttccgataaaagagct
tcagctttttgtaaagaagtaaataaattggttttatctgaagttgttcgacaagtccga
gtaactgaaaaaatttctggtcaaggctctgacgaacaatctaaaacttatgctattcga
cttgatttatattctcgtgatgaatatcaggatgaatatggtgttcttcaggaagagatt
gagtcgacctttagtaatagattcttaaaaattcttaaccgaattattaaaagctatttg
gctaaatctaagcagcggaagtcaggaggtaaagatgatacagtacctgaggttggtcag
gcattaaagccacttgaagatatcgatgaagcacccattgaaggtcgtgctcaagaagct
ctcgaagatgaagacaatgatgctaccaatgagaaaatggtctctaggtcgaaacagcat
gcttcttatgaggggcctgatgaggcagacaaagtcgcccttcgtcagctaaaaggatca
aataaagttgaagacgtaaacatggatgaagaggaagatgagggtttcaagtccgatgaa
agtgtctctgattttaaagaaaggaaattgttggaaaagcagaacacagtttccatttcg
gaaaggcgggaacttcagttaaagacagcaaaagaaatactcagcaattgcaaacacctc
gactttgattacgttaacggtgagtgggcaactgttgaattggtgttcccaatcaatact
gaaaagctattaatggtgtcacttgtggaaaaggcatgttccgaaactgtcatacacgaa
attccgggcattacacgctgtttttccaaacctccagactctgccttagacactgttccg
aaggttatcactgaaggtgtcaatctgaaagcaatttgggaattttacaatgaaatctcc
atgaatgatatttacacaaatgatattgcagcgatccttaggatatacggtgttgaagca
gctcgtaatgcgattgttcatgaggtttcctccgtttttggagtgtatggtattgctgtt
gatcctcgtcatctttccttaattgcagattatatgactttcgagggaggatacaaagcc
ttcaatagaatgggaatagaatataacacttctccatttgcgaaaatgtcttttgagacc
acttgtcactttttgactgaggccgccctccgtggtgatgttgatgacttatccaatcct
tcatctcggttagtcgttggtcgagtcggtaactttggcaccggttcttttgacatattc
acccctgtagtcgattctcctgcaaactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (115)   
   KEGG ORTHOLOGY (1)   
   RefGene (106)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (3)   
   PDB (3)   
Protein domain (5)   
   Pfam (5)   
All databases (133)   

Download RDF
DBGET integrated database retrieval system