KEGG   Salmonella enterica subsp. enterica serovar Paratyphi B: SPAB_04639
Entry
SPAB_04639        CDS       T00628                                 
Name
(GenBank) hypothetical protein
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
spq  Salmonella enterica subsp. enterica serovar Paratyphi B
Pathway
spq03030  DNA replication
spq03410  Base excision repair
spq03420  Nucleotide excision repair
spq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:spq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SPAB_04639
   03410 Base excision repair
    SPAB_04639
   03420 Nucleotide excision repair
    SPAB_04639
   03430 Mismatch repair
    SPAB_04639
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spq03032]
    SPAB_04639
   03400 DNA repair and recombination proteins [BR:spq03400]
    SPAB_04639
Enzymes [BR:spq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SPAB_04639
DNA replication proteins [BR:spq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SPAB_04639
DNA repair and recombination proteins [BR:spq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SPAB_04639
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SPAB_04639
   MMR (mismatch excision repair)
    DNA ligase
     SPAB_04639
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SPAB_04639
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase
Other DBs
NCBI-ProteinID: ABX69952
UniProt: A9MVP4
Position
complement(3880102..3881787)
AA seq 561 aa
MRLWKSMAWGILLWHSQSGALCPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSV
YDQLSARLVQWQRCVGQDVSSTPVSPPLNGTTMHPVAHTGVRKLADRQAVEQWMRGRSEL
WVQPKVDGVAVTLVYQNGKLARAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAVLQG
EIFLQREGHIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQL
AKAGFSLTKKYSLAVKNASEVERARQSWLTSALPFVTDGVVIRMAKEPASQHWRPGQGDW
LAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKRWEAWDI
APGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPDSHFNSLTCFYASETCQEQFISRLVW
LGSRSALGLDGMGEASWRALHQTHRFEHIFSWLALTSAQIANTPGFAKGKSEQIWRQFNL
ARRQPFTRWIMAMDIPLTQAALQASGDRSWEQLLMRTEQHWRQLPATGERRAGRVIDWRD
NPQIKTLSRWLAAQHIPGFGS
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgagattatggaaaagtatggcgtggggaattttattgtggcattcgcagagtggggcg
ctttgcccggcctggccgccagcaagggccgctgaagaaatcgcccgtttacagcaacag
ctcgctgactggaatgacatctactggaaacaaggtgttagcgcggttgacgatagtgtg
tacgaccaactcagcgcaaggctggttcagtggcaacgctgtgttggtcaggatgtttca
tctactccggtttcaccgccgttaaacggtacaacaatgcatcctgttgcgcatacgggc
gtacgcaaactcgcggaccggcaggcggtagaacagtggatgcgcgggcgcagcgagctt
tgggtacaaccaaaagtggatggcgtagcggtaacgctggtttatcaaaacggtaaactg
gccagggctatcagccggggtaacggactacaaggcgaggactggacgccaaaaattcgc
ctgatcccctctataccgcagacaacacaaggcgcgcttgctaacgcggtgttgcagggc
gaaatctttctacagcgcgagggacatatccagcaacggatgggcgggatgaatgcgcgc
tcgaaagtcgcaggaatgttaatgcgccaggataacgcctccgcgctaaattcgttgggt
atttttatttgggcgtggccggacggtccggcaaatatgcccgaaagattaagccaactt
gctaaggctggattcagtctgacgaagaaatattccctggcggtaaaaaatgccagcgag
gtcgagcgggcgcgccagtcatggctgacgtcagcattaccctttgtaacggatggcgta
gtgatacgcatggctaaagaacctgcgtcacaacactggcgacccgggcagggcgactgg
ctggcagcatggaaatatccgccagtagcgcaggtcgcgcaagtgagcgctattcagttc
tcggtggggaaaagcggcaaaattaccgtagtagcgtcgcttgtccccgttatattggat
gataagcgggttcagcgggtcaatatcggctctgtgaaacgttgggaagcgtgggatatc
gcgccgggcgatcagatcctggtgagtctggcggggcaaggcattccccggcttgatgag
gtcgtctggcggagtcgtgagcggagtaagcctgtaccgcctgatagccatttcaactcg
ctgacctgcttttacgcgtcggaaacgtgtcaggaacagtttatctccaggctggtatgg
ctggggtcacggtcggcgttgggtctggacggaatgggcgaagccagctggcgggccttg
catcagacgcatcgctttgagcatatcttctcctggcttgccctgacgtcagcgcaaata
gccaacacgccaggctttgctaaaggaaaaagcgagcagatatggcggcaatttaacctg
gcgcgccggcagccgtttacccgctggatcatggcgatggatatccccttaacgcaggcc
gcattacaggccagcggcgatcgctcatgggagcagttattaatgcgaacagagcaacac
tggcggcagttgccagcgacgggcgagcgccgtgccgggagagttatcgactggcgggat
aatccgcagatcaaaacgctgagcagatggctggctgctcagcatattcccggatttggg
tcttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (3)   
   Pfam (3)   
All databases (24)   

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