KEGG   Salpingoeca rosetta: PTSG_12025
Entry
PTSG_12025        CDS       T04136                                 
Name
(RefSeq) N-alpha-acetyltransferase 38
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
sre  Salpingoeca rosetta
Pathway
sre03018  RNA degradation
sre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PTSG_12025
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTSG_12025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_12025
   03041 Spliceosome [BR:sre03041]
    PTSG_12025
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PTSG_12025
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PTSG_12025
Spliceosome [BR:sre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PTSG_12025
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 16076625
NCBI-ProteinID: XP_004996039
UniProt: F2U588
Position
Unknown
AA seq 117 aa
MDAYLKKKIAVVTQDGHFIVGTLRGFDQATNLILTDSSERVGNWLVNWMWSMRTASISNL
CKRKLYLRSSIDGTLRGFDQATNLILTDSSERVVSLHEGVEVVPLGLYIIRGDNVLH
NT seq 354 nt   +upstreamnt  +downstreamnt
atggatgcgtacctgaagaagaagattgccgtggtgacacaagatggccactttattgtg
ggcacgctgcgcggctttgaccaggcaaccaacctcattctcacagactcttccgagcga
gtaggcaattggttggtgaactggatgtggagcatgaggacagcatcgatctcgaatctg
tgcaagcggaagctgtacctccggtcgtctattgatggcacgctgcgcggctttgaccag
gcaaccaacctcattctcacagactcttccgagcgagtagtatcgctgcacgaaggggtg
gaagtcgtgccacttggcctgtacatcatcagaggagacaatgttctgcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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