KEGG   Salinibacter ruber M8: SRM_01077
Entry
SRM_01077         CDS       T01209                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
srm  Salinibacter ruber M8
Pathway
srm03030  DNA replication
srm03410  Base excision repair
srm03420  Nucleotide excision repair
srm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:srm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SRM_01077 (ligA)
   03410 Base excision repair
    SRM_01077 (ligA)
   03420 Nucleotide excision repair
    SRM_01077 (ligA)
   03430 Mismatch repair
    SRM_01077 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:srm03032]
    SRM_01077 (ligA)
   03400 DNA repair and recombination proteins [BR:srm03400]
    SRM_01077 (ligA)
Enzymes [BR:srm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SRM_01077 (ligA)
DNA replication proteins [BR:srm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SRM_01077 (ligA)
DNA repair and recombination proteins [BR:srm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SRM_01077 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SRM_01077 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     SRM_01077 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SRM_01077 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH PTCB-BRCT RNA_pol_A_CTD HNOB Lar_restr_allev E1-E2_ATPase
Other DBs
NCBI-ProteinID: CBH23998
UniProt: D5H7J3
Position
complement(1230578..1232653)
AA seq 691 aa
MPDVDPTPDLDLEAIDSEPAAAEAAEQLRAALRHHNYRYYVLDAPVVSDAEYDRLFQQLQ
TLEAEYPGLQTPDSPTHQVGGPVRDELGTVTHPAPMLSLKAVYEEDEVRNFAETCRKELG
RETVTYTAEPKFDGLAVELIYEDGRLVQGATRGDGETGEEITANVKTIKGVPLRLRDDAR
PVPDRLVVRGEAYMRKDEFNAFNRRREEEGKKVFANPRNAAAGSLRQLDSNITARRPLRI
YFYEIAPVDGRDFATHAEVLEALPEWGLRVCEDHIRRCDGIDAALAHHAALVDRRDDLPY
EIDGLVIKVNDFDGHETLGVRDRDPRWAAAYKFPPRRATTSIEDLFVQVGRTGRITPVAV
LAPVEVGGVEVTRASLHNQNEIDRKDIRIGDTVLIERAGDVIPQVVKVIEDERDGTEAPY
HIPDACPVCGSEVVLSDDKKQAFCTGGMTCPAQFRERLKHYASREATDIEGLGDKRAEQL
IDAGLIQTISDLYELEKADLLQLERYADKSAQNLIDEIEASLEQDLDRFLYALGIPLVGS
ATARLLAQHFDTLDALVDADEDALTTIDDIGPEVAHSIATFFADDANRGVIDEMRDAGLT
LTNPYAEDAAPLAGLTFVFTGSLEDWTRSAVQRFVEQHGANATSSVSGNTDYVVAGPGAG
SKRDDAEALGVPVLDEDDFHALLRERDIEMA
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgcccgacgtagacccgacgcccgacctcgacctggaggccatcgactccgagccggcc
gcggcggaggcggccgagcagcttcgcgccgcgctccggcaccacaactaccgctactac
gtcctcgacgccccggtcgtctccgacgccgagtacgaccggctcttccaacagctccag
accctggaggccgagtaccccgggctgcagacgcccgactcccccacccatcaggtgggc
ggcccggtgcgcgacgagctgggcacggtcacccaccccgcgcccatgctcagcctgaag
gccgtctacgaggaggacgaggtgcgcaacttcgccgagacgtgccgcaaggagctgggg
cgcgagacggtcacctacaccgccgagcccaagttcgacgggctggccgtggagctgatc
tacgaggacgggcgcctcgtgcagggcgccacccgcggggacggcgagacgggcgaggag
attacggccaacgtgaagaccatcaaaggcgtccccctccgcctccgggacgacgcccgg
cccgtccccgaccgcctcgtggtgcggggcgaggcgtacatgcgcaaggacgagttcaac
gcgttcaaccggcggcgcgaggaggagggcaagaaggtgttcgccaacccgcgcaacgcc
gccgccggctcgctccggcagctcgactccaatatcaccgcgcgtcgccccctccgcatc
tacttctacgaaattgcccccgtcgacgggcgcgactttgcgacgcatgccgaggtgctg
gaggccctgccggagtggggcctgcgcgtctgtgaggaccacatccgccgctgcgacggg
atcgacgcggcgctggcccaccacgccgccctcgtggaccggcgcgacgacctcccctac
gagatcgacggcctcgtcatcaaggtgaacgacttcgacgggcacgagacgctcggcgtg
cgcgaccgggacccgcgctgggcggcggcctacaagtttccgccgcgccgcgccaccacc
tcgatcgaggacctcttcgtgcaggtggggcgcaccggccgcatcacgcccgtcgccgtg
ctggcacccgtagaggtggggggcgtggaggtgacgcgggcctccctccacaaccagaac
gagatcgaccgcaaggacatccgcatcggcgacacggtgctcatcgagcgggccggcgac
gtgatcccgcaggtggtgaaggtgatcgaagacgagcgcgacggcaccgaagccccctac
cacatccccgacgcgtgcccggtctgcgggtccgaggtggtcctgagcgacgacaagaag
caggcgttctgcacgggcggcatgacgtgccccgcccagttccgcgagcggctgaagcac
tacgcctcccgcgaggcgaccgacatcgaggggctgggcgacaagcgcgccgagcagctc
atcgacgcggggctgattcagaccatctcggacctctacgagctggagaaggccgacctg
ctgcagctggagcgctacgccgacaagtcggcccagaacctgatcgacgaaatcgaggcg
agcctggagcaggacctcgaccgcttcctctacgccctcggcatcccgctggtggggtcg
gccacggcccgcctcctcgcgcagcacttcgacacgctcgacgccctcgtggacgccgac
gaggacgcccttacgacaatcgacgacatcggcccggaggtggcccacagcatcgccacc
ttcttcgcggacgacgccaaccgaggcgtcatcgacgagatgcgggacgcggggctgacc
ctgaccaacccgtacgccgaggacgcggcgccgctggcgggcctcacgttcgttttcacc
ggcagcctggaggactggacgcgcagcgcggtgcagcggttcgtggagcagcacggcgcg
aacgccacctccagcgtcagcggcaacaccgactacgtggtggccgggcccggggccggc
agcaagcgcgacgacgccgaggccctcggcgtgccggtgctggacgaggacgacttccat
gccctgctccgggagcgggacattgagatggcgtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (32)   

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