KEGG   Salinibacter ruber M8: SRM_01970
Entry
SRM_01970         CDS       T01209                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
srm  Salinibacter ruber M8
Pathway
srm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:srm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SRM_01970 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:srm03021]
    SRM_01970 (rpoC)
   03400 DNA repair and recombination proteins [BR:srm03400]
    SRM_01970 (rpoC)
Enzymes [BR:srm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SRM_01970 (rpoC)
Transcription machinery [BR:srm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SRM_01970 (rpoC)
DNA repair and recombination proteins [BR:srm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SRM_01970 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 Apocytochr_F_C PPP1R21_C
Other DBs
NCBI-ProteinID: CBH24891
UniProt: D5HA36
Position
complement(2246364..2250710)
AA seq 1448 aa
MPYGNSKEIETDFDSITISLASPEDILERSYGEVMKPETINYRSFKPEMGGLFCEKIFGP
VKDYECHCGKYKRIRYKGIICDRCGVEVTRKAVRRERMGHISLSVPVVHIWYFKTLPNKI
GHLLGLKSKDLEKVIYYENYIVIQPGTAERLGVEENQLLTEEEYYEILYQIRDDNNRLQD
DNEEKFIAKIGGEAVETMLERLELDKLAQELRYQVRTETSQQRKSKALKRLDVVEAFREA
NEDGTNKPEWMVMRVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK
APEVILRNEKRMLQEAVDSLFDNSRKSNSVRGSSNRPLKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVSGPHLELHQCGLPKEMAVELFKPFIIRRLIERGIVKTVKSAKKYVDKKTE
DVWDILEKVIQGRPVLLNRAPTLHRLGIQAFQPVLTENKAIEIHPLVCPAYNADFDGDQM
AVHVPLSHEACLESMVLMLSSHNVRSPADGGPLAVPSQDMILGLYYITKAKSNQKGEGMR
FANVQEVRQAFDQDQVALHAKIQLRDPDGSGEMIDTTVGRVIFNETLPDTLDYVNEVLST
KNVRPVIARVLKQTGFEETADFLDAIKDMGFRRSTTSGMTFSLSDIIIPDEKEELIEEAN
ETVEEAEQNYSMGFITDNERYNQVIDVWTKTNNKVSEVLFDALKEHKEGFNPIFTMADSG
ARGSQEQIRQLGGMRGLMAKPQKNIGEGGGGGEILENPILSNFKEGLTVQEYFISTHGSR
KGLADTALKTADAGYLTRRLVDVSQSVTVTEHDCGTLRGINVGALKDNEEVVAPLSDRIT
GRVSVRDVYDPHTDELIVEANELITDEIADDIAQTSIEEIEIRSVLTCEAERGVCTLCYG
QNLATGRMVEVGESVGVVAAQSIGEPGTQLTLRTFHTGGTATREVGESTIQAKFAGTLEF
ENLRTVTYEDTDGPKEVVLSRQGEVRIMDTDGDRRELTSYVVPYGAELLVDEGEDVEDGD
VLASWDPYNSLILTEANGTVRFEDIIEDTTYREETDEQTGHKEKVIVESRERTLTPAVIV
ETEDGEQREYNMPVDARIQVDEGDEVQAGQTLAKMPRQAAQTSDITGGLPRVEELFEART
PDEPAVVSEIDGIVSFGDQKRGSQEVIVTSRDGDMEKSYMVSLSKHMLVHEGDYVEAGDR
LCDGQIAPHDILSIKGPRAVQEHLLNEVQEVYRLQGVDIDDKHFEVVIRQMMKRVKITEP
GDTNFLEEDQVDRQKMASINDDLYDKFVVKDPSDANVEIGEVIGRRRLRELNSELKREDK
PEIEVREARPAVGEPLLLGITKASLATDSMISAASFQETTKVLTNSAIRSRTDPLEGLKE
NVVAGHSIPAGTGQREYRDLVVGSKSELEELQAAIGGDGESPSGDGAAGDGAPSEEDVEQ
IEASGSEN
NT seq 4347 nt   +upstreamnt  +downstreamnt
atgccgtacggtaattccaaggagatcgaaactgacttcgacagcatcaccatcagcctg
gcctccccggaagacattctggagcggtcctacggcgaggtgatgaagcccgaaacgatc
aactaccggtcgttcaagcccgagatgggcgggctcttctgcgagaagatcttcggcccg
gtcaaggactacgagtgccactgtgggaagtacaagcgcatccggtacaaggggattatc
tgtgaccggtgcggcgtggaggtcacccggaaggcggtccgtcgagagcgcatggggcac
atttccctgagcgtgccggtggtccacatctggtacttcaagacgctgcccaacaagatc
gggcacctgcttgggctcaagtccaaggacctggagaaggtcatctactacgagaactac
atcgtcatccagccgggcacggccgagcgactcggggtggaggagaaccagctcctgacg
gaggaggagtactacgagatcctctaccagatccgggacgacaacaaccgcctccaggac
gacaacgaggagaagttcatcgccaagattggtggcgaagcggtcgagacgatgctcgaa
cggctcgagctcgataagctcgcccaggagctccgctaccaggtgcgaaccgagacgagc
cagcagcgcaagtcgaaggcgctgaagcggctcgacgtggtggaggccttccgcgaggcc
aacgaagacggcaccaacaagccggagtggatggtgatgcgcgtgattccggtcatcccg
ccggagctgcgcccgctcgtccctctcgacggcggacggtttgcgaccagtgacctgaac
gacctgtaccgccgggtcatcatccgcaacaaccgcctcaagcgcctcatcgacatcaag
gcgccggaggtcattctgcggaacgagaagcggatgttgcaggaggcggtcgactcgctc
ttcgacaacagccgcaagtccaactcggtgcgcggctcctcgaaccggcccctcaagagc
ctcagcgacatgctgaagggcaagcaggggcgcttccgccagaacctcctcggcaagcgc
gtcgactactcgggccgctcggtcattgtctccgggccgcacctggagctgcaccagtgc
gggctgccgaaggagatggccgtcgagctcttcaagccatttatcattcgccgtctcatc
gagcgcggcatcgtcaagacggtcaagagcgcgaagaagtacgtcgacaagaagaccgag
gacgtgtgggacatcttggaaaaggtgattcagggcaggccggtcttactcaaccgtgcc
cctacgctccaccggctcggcattcaggcctttcagcccgtcctcaccgagaacaaggcc
atcgagattcacccgctcgtctgcccggcgtacaacgccgacttcgacggggaccagatg
gccgtccacgtgcccctctcgcacgaggcctgcctcgagagcatggtgctcatgctgtcg
agccacaacgtccgcagcccggccgacggcggcccgctcgccgtgccgagccaggacatg
attctgggcctctactacatcaccaaggcgaagtccaaccagaagggcgagggcatgcgc
ttcgccaacgtgcaggaggtgcgccaggccttcgaccaggatcaggtggccctccacgcc
aagatccagctccgcgaccccgacgggtccggagagatgatcgacacgaccgtgggccgc
gtcatcttcaacgaaacgctgcccgacacgctcgactacgtcaacgaggtcctgagcacg
aagaacgtgcggccggtcattgcccgcgtcctgaagcagaccggctttgaggagacggcg
gacttcctggacgcgatcaaggacatgggcttccgccgctccacgacctcgggcatgacg
ttctccctctccgacatcatcattccggacgagaaggaggagctcatcgaagaggccaac
gagacggtggaggaggccgaacagaactactcgatgggcttcatcaccgacaacgagcgc
tacaaccaggtcatcgacgtctggacgaagacgaacaacaaggtctccgaggtgctcttc
gacgccctgaaggagcacaaggagggcttcaaccccatctttacgatggccgactccggg
gctcgcggctcgcaggagcagattcgccagctcggcggcatgcgaggcctgatggccaag
ccgcagaagaacatcggcgaaggcggcgggggcggcgagattctcgagaacccgatcctc
tccaacttcaaggagggcctgacggtgcaggagtacttcatcagcacccacgggtcgcgg
aagggactggccgacacggcgctcaagaccgccgacgccggctacctcacgcgccgcctc
gtcgacgtgtcccagagcgtgacggtgaccgagcacgactgtggcaccctgcgcggcatc
aacgtcggcgcgctgaaggacaacgaggaggtcgtcgcgccgctttccgaccggattacg
ggtcgggtgtcggtccgcgacgtgtacgatccccacaccgacgagctcatcgtggaggcg
aacgagctcatcaccgacgagattgccgacgacatcgcgcagacctccatcgaggagatc
gagatccggtcggtgcttacctgtgaggccgagcgcggcgtgtgcacgctctgctacggc
cagaacctcgccaccggccgcatggtcgaggtgggcgagtcggtcggcgtggtcgccgcc
cagtcgattggggagccgggcacgcagcttacgctccggaccttccacaccggcggcacc
gcgacgcgcgaggttggcgagtcgaccattcaggcgaagtttgccggcacgctcgagttc
gagaacctccgtacggtcacgtacgaggacaccgacgggccgaaggaggtcgtgctctcc
cggcagggcgaagtccgaatcatggacacggacggcgaccgccgcgagctgaccagttac
gtcgtgccgtacggcgcggagttgctggtcgacgagggcgaagacgtcgaggacggagac
gtgctggcgagctgggacccctacaacagcctgatccttacggaggccaacggcacggtg
cggttcgaggacattatcgaggacaccacctaccgcgaggagaccgacgagcagaccgga
cacaaggagaaggtcatcgtcgaaagccgcgagcgcaccctcacgcccgccgtcatcgtc
gagaccgaggatggggagcagcgggagtacaacatgcccgtcgacgcccgaatccaggtc
gacgaaggggacgaggtgcaggccggccagaccctcgcgaagatgccgcgtcaggccgcc
cagaccagcgacattaccggtggtctgccgcgcgtggaggagctcttcgaggcccgtacg
ccggacgagccggccgtcgtcagtgagattgacggcatcgtcagcttcggcgatcagaag
cgtggctcgcaggaggtcatcgtgaccagccgcgacggggacatggagaagagctacatg
gtctccctctcgaagcacatgctggtgcacgagggcgactacgtagaggccggcgaccgg
ctctgtgacggacagattgccccgcacgacatcctgtccattaaggggccacgggccgtg
caggagcatctcctcaacgaggtccaggaggtctaccgcctccagggcgtcgacattgac
gacaagcacttcgaggtcgtgatccggcagatgatgaagcgggtgaagattaccgagccg
ggcgacaccaacttcctcgaggaggaccaggtggatcgccagaagatggcgagcatcaac
gacgacctgtacgacaaattcgtcgtcaaggacccgagcgacgcgaacgtcgagattggc
gaagtcatcggccgccggcgcctgcgcgagctcaactcggagctgaagcgcgaagacaag
ccggagattgaggtccgcgaggctcgacccgcggttggtgagccgctactcctcggcatc
acgaaggcgtccctcgccaccgactcgatgatctctgcggcctcgttccaggagacgacg
aaggtgctcacgaactccgccattcggtcccggacggaccccttggaagggctcaaggag
aacgtcgtcgcgggccactccatccctgcgggcacgggccagcgcgagtaccgcgacctg
gtcgtgggctcgaagtccgagctcgaagagctgcaggcggccatcggcggcgacggcgaa
agcccgagcggcgacggggcggccggcgacggtgcgccgagcgaggaggacgtcgagcaa
atcgaggcgtccggctccgaaaactag

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