KEGG T04246: TUE45

Streptomyces reticuli: TUE45_07099

Entry

TUE45_07099       CDS       T04246

Name

(GenBank) Putative DNA ligase-like protein/MT0965

K01971

bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]

Organism

srw Streptomyces reticuli

Pathway

srw03450

Non-homologous end-joining

Brite

KEGG Orthology (KO) [BR:srw00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TUE45_07099
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:srw03400]
    TUE45_07099
Enzymes [BR:srw01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TUE45_07099
DNA repair and recombination proteins [BR:srw03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TUE45_07099

SSDB

Motif

Pfam:

LigD_Prim-Pol DNA_primase_S baeRF_family6 baeRF_family7

Other DBs

NCBI-ProteinID:

CUW32350

Position

I:8045880..8046815

AA seq 311 aa
MSRDDARTIRAGRRSVRIQRPGKVLFPGGGGAKEYTKGDLADYYRAVAPYLLPHLRGRPL
MLERHPDGLDGPRFMQKNTPEHYPEWIARAEVGKEGGTVTHVVCNDTATLLYLTDQACLT
LHRWLSRTDRAGGPDHPDRLVLDLDPPGDDFAAVREAAGRLRELLDDVGLPAAPMTTGSR
GVHLVVPLDGRHDVDTVREFARDLAETAAARHPDRLTTAARKQDRGDRLYLDVQRNAYAQ
TAVAPYTVRARPGAPVAVPLTWEQLDDPGVDARRWTIADAVDQARTDPWAELPARGRALG
PARRRLADIRP

NT seq 936 nt +upstreamnt +downstreamnt
atgagccgcgacgacgcccggaccatacgggcgggccgccgctcggtgcggatccagcgg
ccggggaaggtgctcttccccggcggcgggggagcgaaggagtacaccaagggcgacctc
gccgactactaccgggccgtcgcgccgtacctgctgccgcacctgcggggccgtccgctg
atgctggaacgccatccggacggcctggacggcccgcggttcatgcagaagaacaccccg
gagcactacccggagtggatcgcccgcgccgaggtcggcaaggagggcggcacggtcacg
cacgtggtctgcaacgacaccgccaccctgctctacctcaccgaccaggcctgcctcacc
ctgcaccgctggctctcccgcaccgaccgggccggcggccccgaccaccccgaccggctc
gtcctcgacctcgatccccccggcgacgacttcgccgccgtccgcgaggccgccggccgg
ctgcgcgagctgctcgacgacgtcggtctgcccgcggcacccatgaccacgggctcgcgc
ggcgtgcacctcgtcgtcccgctcgacggccgtcacgacgtcgacacggtgcgggagttc
gcccgcgacctcgccgagaccgccgcggcccggcaccccgaccggctcaccaccgccgcc
cgcaaacaggaccgcggcgaccgcctctacctcgacgtgcagcgcaatgcgtacgcgcag
accgccgtcgcgccctacaccgtccgcgcccgccccggcgccccggtggccgtgccgctg
acctgggagcagttggacgaccccggggtcgacgcccgccgctggaccatcgccgacgcc
gtcgaccaggcccgcaccgacccctgggccgagctgccggcccggggccgcgccctgggc
ccggcccggcgccgtctcgccgacatccggccctaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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