KEGG   Spiribacter salinus: SPISAL_02445
Entry
SPISAL_02445      CDS       T02685                                 
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
ssal  Spiribacter salinus
Pathway
ssal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPISAL_02445
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssal03019]
    SPISAL_02445
Enzymes [BR:ssal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SPISAL_02445
Messenger RNA biogenesis [BR:ssal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SPISAL_02445
SSDB
Motif
Pfam: DEAD Helicase_C CMS1 UTP25 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AGM40584
UniProt: R4V3K2
Position
complement(497826..499100)
AA seq 424 aa
MEQNHLSDTRFESLNLHESLLTGLKEAGFEHCTPIQAEALPIALKGGDVAGQAKTGTGKS
AAFLLACMHRLMTTPVAEDKTGPWAIILAPTRELALQIHKDAERLGWFTGMDFACIYGGT
GYESQRKALERGTDILIGTPGRIIDFYKQGVFSLDNIEVCILDEADRMFDMGFIADIRYL
LRRMPPPEKRLNMLFSATLSERVRELAYEHMNEPESIKIESETITADRVRQTLYHVENTE
KIGLLLGVLQQQDPTRTLIFVNTKRDADRVTGYLMGNDIKAAVISGDIPQNKREQLLGKF
QSGDLPILVATDVAARGLHIPEVSHVINYDLPQDAEDYVHRIGRTARAGAAGEAISFACE
SYVYSLPDIEKYIDQKIPSEMAPPDLIATDIKAPARMDNRRSTGGNRRGSGGGNNRRPSS
SSQS
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggaacaaaatcatctctccgacacccgctttgaatccctcaacctgcacgagtcgctg
ctgaccggcctgaaagaggccggcttcgagcactgcacgccgattcaggccgaagcccta
cccatcgcgctaaaaggcggcgatgtggccggccaggcaaagaccggcacaggcaaatcg
gccgccttcctgctggcctgcatgcatcggctgatgaccacgccggtcgccgaggataaa
accgggccctgggcgatcatcctcgctcccacccgggagctcgcactgcagatccacaag
gacgcggagcgcctcggctggttcaccggcatggatttcgcctgcatctatggcggcacc
ggctatgaaagtcagcgcaaggccctcgagcgtggcacggatatcctcatcggcacgccc
gggcggattatcgatttctacaagcaaggcgtcttcagcctcgacaacatcgaggtctgc
attcttgatgaggcagaccgaatgttcgacatgggctttatcgccgatatccgctatctg
ctgcgccgcatgccgccgccagagaagcggttgaacatgctcttctcggccacgctatcg
gaacgggtccgcgagctcgcctacgagcacatgaacgagcccgaatccatcaagatcgag
tcggaaaccatcaccgccgaccgtgtgcgccagacgctctatcatgtggagaacaccgag
aaaatcggcctcctgctcggtgttctacaacagcaggatcccacccgaaccctgattttc
gtcaataccaaacgcgatgcagatcgcgtcaccggctatctgatgggcaatgacatcaag
gcagccgtcatctcgggcgatatcccacagaacaaacgcgagcaattgctcggcaagttc
cagtccggtgatctgcccatcctggtcgcgaccgatgtcgccgcacgggggctgcacatt
ccggaagtcagccatgtcattaactatgacctgccccaggatgcggaggattacgtccat
cgcattggccgcacagcccgggccggagcggccggagaagcgatcagcttcgcctgcgag
agctacgtctactcgttgccggacatcgagaagtacattgaccagaaaataccctcggag
atggcgccaccggacctgatcgccactgacatcaaagccccggcacggatggacaatcgc
cgcagcacgggggggaatcggcgcggcagcgggggcggaaacaaccgacgcccgagttcg
tccagtcagtcgtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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