KEGG   Sus scrofa (pig): 100037274
Entry
100037274         CDS       T01009                                 
Symbol
TAF4B
Name
(RefSeq) transcription initiation factor TFIID subunit 4B
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03022  Basal transcription factors
ssc05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100037274 (TAF4B)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    100037274 (TAF4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssc03021]
    100037274 (TAF4B)
   03036 Chromosome and associated proteins [BR:ssc03036]
    100037274 (TAF4B)
Transcription machinery [BR:ssc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100037274 (TAF4B)
   Coactivators
    SAGA/TFTC/STAGA complex
     100037274 (TAF4B)
Chromosome and associated proteins [BR:ssc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     100037274 (TAF4B)
SSDB
Motif
Pfam: TAF4 TAFH
Other DBs
NCBI-GeneID: 100037274
NCBI-ProteinID: XP_003127923
Ensembl: ENSSSCG00000003718
UniProt: A0A4X1VMX4 A0A8D2BKS4
Position
6:110855636..110972798
AA seq 864 aa
MPAGLTEPTGAAPPASVGASGTVTMAPAAALPVRVESTPVALGAVTKAPVSVCVESTASQ
PLRSPIGTLVTKVAPVSALPKLSSGPRLPAPQIVAVKAPNTTTIQLPANLQLPPGTVLIK
SNSGQLMLVSPQQAVTRTEATGNITSRPAVPMNTQTVKICTMPNSSSQLIKKVAVAPVKQ
LAQVGTTVVTTVPKPSPVQSAAVPTTVTPVKPLNTVTTLKPSSLGASSAPSNEPDLKAEN
SAAAQANLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEAEEF
TRQLYVELKSSPQPHLVPFLKKSVIALRQLLPNSQSFIQQCVQQTSSEVVIATCTTTVTP
SPVVTTAVSSIQPEKSIVGSEAATPGTVSVQTLNPLAGPGAAKTGVVTLHSVGPAAVPGG
TTAGTVVLQTPKPLVTSLQNTVTTVSLQPEKPVVSGAAVGAAVTLALPSVTFGETSAAAL
CLPSVKPVVTSAGTTSDKPVIGAPVQIKLAQPGPILAQPAGIPQAVKVKQLVVQQPSGGL
AKQVTTLSHSSALTIQKSGQKTVTVSTAIPASQFPQASILKQITLPGNKILSLQSPIQKN
KIKENGTTSFRDEDDINDVTSMAGVNLSEENACILAANSELVGTLVQSCKDEPFLFIGAL
QKRILDIGKKHDITEFNSDAVNLISHATQERLRGLLEKLTTIAQHRMTTYKASENYILSN
DTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQ
IQHRDANLTALAAIGPRKKRPLESGSGSEGLKDNLFASGTSSLTATKQLLRPRITRICLR
DLIFCMEQEREMKYSRALYLALLK
NT seq 2595 nt   +upstreamnt  +downstreamnt
atgcccgcgggcctcacagaaccgaccggcgccgctccccccgccagtgtgggtgcctcc
gggactgtgaccatggcccccgccgcggctctgccggtccgggtggagagcactccggtg
gccttgggcgccgtgactaaggctcctgtcagtgtctgcgtggagtccacggcgtcccag
cccctgcggtcccccatagggaccttggtgaccaaagtggctcctgtcagtgctcttcct
aaactcagcagcggccctcgtctgccggctcctcaaattgtcgctgtgaaagcccccaac
accacgacaatccagttgcctgctaatttgcagcttcctccaggaacagttttgatcaaa
agtaacagtggtcagttgatgttggtatctcctcagcaagctgtaacaagaacggaggcc
acaggcaatataacttcaaggccagctgtaccaatgaatactcaaacagtcaaaatctgt
acaatgccgaattccagttcacagttaatcaagaaagtggcagtggcacctgttaaacaa
ttggcacaagtaggaactactgtggtaaccaccgttcccaagccttccccagtacaatct
gcggctgtgccaaccactgtaactccggtaaagccgctgaatactgtaactaccttgaag
ccttcaagtttgggagcatcatccgccccctcaaatgagcctgatctcaaagcggagaac
tcagccgctgctcaggctaatctttctccgacaatgctagaaaatgtgaagaaatgtaag
aacttcctcgcaatgttaataaaactagcatgtagtggatcacagtccccagaaatgggg
cagaatgtgaagaagctggtggaacaactcttggacgcaaaaattgaagcagaagaattt
actagacaactgtatgttgaactcaagtcttcacctcagcctcacctggttcctttcctt
aagaaaagtgtgattgccttacgacaactcttgcctaactcccagagctttattcagcag
tgtgttcagcagacttctagcgaggtagtcattgctacctgtaccacaacagtaacacct
tcgcctgtggtgacaactgcggtttcctccatccaacctgaaaagtccatagttggttct
gaagcggcaacacctggaactgtgtcagtgcaaactctgaatccacttgctggtcctggg
gcagcaaaaactggagttgtgacacttcattctgtgggtccagctgctgtgccaggagga
acaacagctggaactgttgtgcttcagactccgaaacctcttgtgacatctctacagaac
acagtgacaacagtgtcacttcagcctgaaaagccagttgtctccggggcagcagtgggg
gcagcagtgacgctggctctcccctcggtaacttttggagaaacttcagcagcagctctt
tgtcttccttctgtgaaacctgttgttacttctgctgggaccacatctgacaagcccgtc
attggggctccagtccaaatcaaacttgcacagccgggccccatccttgcacaaccggca
ggtattccacaggcagttaaagtcaaacaactagtagtccagcagccttcaggaggcctt
gcaaaacaagtgactacactttcccattcctcagcattgaccattcagaaatctggacag
aagacagtgacagtgagcactgcaatacctgccagtcagtttcctcaagcatccattcta
aaacaaatcactctgccaggaaataaaattctgtcacttcaatcacctattcagaaaaac
aaaataaaagagaatggaacaacatctttcagagatgaagacgacatcaatgatgtgact
tccatggcaggggtcaacctcagtgaagaaaatgcctgcatcttagcagcaaactctgaa
ttggttggcacactcgtgcagtcatgtaaagatgaaccatttcttttcattggagctcta
caaaagagaattttagatattggtaaaaagcatgacattacagaatttaactctgatgct
gtgaacttgatctcccatgcaacacaggagcgattacgaggccttctagaaaaactgact
acaattgctcagcatcgaatgacaacttacaaggcaagtgaaaattacattctgtctaat
gacaccaggtcacagctcaaatttctggaaaagctagatcaactggagaagcagagaaag
gatttagaagaaagagaaatgttacttaaggcagccaagagtcgttccaataaagaagat
ccagaacagctgagattaaagcagaaagccaaagagttacaacagttggagctcgcacag
atacagcacagagatgctaatctcactgctcttgcagctattggaccaaggaagaagaga
ccactagaatctgggtctggaagtgagggcttaaaagataacctttttgcttctgggaca
tccagcctgacagccaccaaacagttgcttcgtccaagaatcacaagaatatgcctcagg
gacctgatcttctgcatggagcaggagagggagatgaagtattcccgagctctgtacctg
gcccttctgaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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