KEGG   Sus scrofa (pig): 100153107
Entry
100153107         CDS       T01009                                 
Symbol
PAN2
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X7
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100153107 (PAN2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100153107 (PAN2)
Enzymes [BR:ssc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     100153107 (PAN2)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100153107 (PAN2)
  mRNA degradation factors
   3'-5' decay
    Pan complex
     100153107 (PAN2)
SSDB
Motif
Pfam: PAN2_N UCH_1 RNase_T UCH WD40_like
Other DBs
NCBI-GeneID: 100153107
NCBI-ProteinID: XP_001929328
Ensembl: ENSSSCG00000000393
UniProt: A0A287AC03 A0A4X1W8L2
Position
5:complement(21712222..21730528)
AA seq 1198 aa
MNFESLDPGLAEYTPSMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR
QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDESEDMHSLLLTESSTLLVGGLQNHILE
IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHVFDAFSGSLS
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPIGREE
EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP
VRCVIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADS
DEASGKGNLARLIQRWNRFILTQLHQDLQELEVPQAYRGAGGSSFCSSGDSVIGQLFSCE
MENCSLCRCGSETVRASSTLLFTLSYPEDKTGKNCDFAQVLKRSICLEQNTQAWCDNCEK
YQPTIQTRNIRHLPDILVINCEVNSLKEADFWRMQAEVAFKMAIKKHGGEISKNKEFALA
DWNELGSPEGMRMCPSIEELKNVWLPFSIRMKMTKNKGLDVCNWTDGDEMQWGPARAEEE
HGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPIDKH
EAVQFDMNWKVPAILYYIKRNLNSKYNLNIKNPIEANVLLAEASLARKQRKTHTTFIPLM
LNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPF
IDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGL
QKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDARTAL
QLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVLAL
NT seq 3597 nt   +upstreamnt  +downstreamnt
atgaacttcgagagtctggaccctggcctggcagagtataccccgtccatgcattccgcc
ctggatcctgtcctggatgcccacctgaacccaagtctgctgcagaatgtggagctagac
ccagagggagtggctttagaggctcttccagtccaggagtcagtgcacataatggaaggt
gtctactctgagttgcacagtgtggtggctgaagtgggcgtgcctgtctccgtctcccac
tttgacttgcacgaggagatgctgtgggtgggaagccatgggggccatgctacatcattt
tttggtccagctttggagcgctactcctcctttcaggtcaatggcagtgatgacattcgg
cagatccagagcctggagaatggcatcctttttctgaccaaaaacaatctcaaatatatg
gcccgtgggggcctcattatatttgattacttgttggatgagagtgaggatatgcacagc
ctcctactgactgaaagcagcactctgcttgttggtgggctgcagaaccacatattggaa
attgaccttaacactgtccaggagactcagaagtatgcagttgagacacctggagtcact
atcatgagacagacaaatcgcttcttcttctgtggccacacatctggcaaggtttccctg
cgagacctccgcactttcaaggtggagcacgtgtttgatgccttctcagggagtctgtcg
gattttgatgtgcatggcaacctgttagctgcctgtggcttctccagccgcctcactggc
ctggcctgtgaccgtttcctcaaggtgtatgatcttcgaatgatgcgtgccatcacacca
cttcaagtacacgtggatcctgccttcttacgctttatccctacgtatacttctcgtctt
gctatcatctcccagtcagggcaatgccagttttgtgagcccacaggcctggccaaccca
gcagacatctttcatgtgaatcctgtggggcctctgctaatgacgtttgatgtgtcagcc
agcaagcaggcccttgcctttggggattctgagggctgtgtgcacctctggactgattct
cctgagccttctttcaacccctactcccgtgagactgaatttgctttgccctgtcttgtg
gactcactgcctcctctggactggagccaggacctgctgcctctttccctcatccctgtc
ccgctcaccactgacacgcttctctctgattggcctgccgccaactccgctccagctccc
aggcgagcaccccctgtggatgcagagattctgcgcaccatgaagaaggtgggcttcatt
ggctatgcgcccaaccctcgcacaaggctacgcaatcagattccataccgactcaaggag
tctgacagtgaatttgacagcttcagccaggtcactgagtcaccgatagggcgagaagag
gagccacatctccacatggtctctaagaaataccgcaaggtgaccatcaaatactccaag
ctagggctggaggactttgacttcaaacactacaataagacgctgtttgccggattagag
ccccacatccccaatgcctactgtaactgcatgatccaggtgctctatttcttggagcct
gttcgctgtgtaatccagaaccacctttgccagaaggagttctgcctggcatgtgagctg
ggcttcctctttcacatgttggacctctcccgaggtgacccttgtcagggcagtaatttt
ctccgggcgttccgcaccattcctgaggcttcagcccttggtctgattttggctgactcg
gatgaggcttcaggcaagggcaacctggccaggctcattcagaggtggaatcgcttcatt
ctcactcagctgcatcaagatttgcaggagctggaagtaccccaggcttatcgaggtgct
ggaggcagcagcttttgctcatcgggggactctgtcattgggcagctgttcagctgtgag
atggaaaactgcagcctctgccgctgtggcagtgagaccgtgcgagcctcatccaccctg
ctcttcacgctctcctaccctgaggataaaaccgggaagaactgtgactttgctcaggtg
ctgaagcgaagcatctgtctggagcagaatacacaggcctggtgtgacaactgtgaaaag
taccagcccacgattcagacccgcaacatccgccacctgccagatattcttgtcatcaat
tgtgaggtgaacagcttaaaagaagctgatttctggagaatgcaggctgaggttgccttc
aagatggcaataaagaagcatggtggggaaatctccaagaacaaggagtttgctttggct
gattggaacgaactagggagtccagagggcatgcggatgtgtccctccattgaggagctg
aagaatgtctggcttcctttctccattcgaatgaagatgaccaagaacaaagggctggat
gtttgcaattggactgatggggatgagatgcagtggggcccagccagggcagaggaggag
catggtgtctatgtgtatgacctgatggctactgtggtacacatcctggactcacgcaca
gggggcagcctggtggctcacatcaaagttggagagacctaccaccagcgcaaggagggc
gttacccaccagcagtggtatctcttcaatgactttctcattgaacctattgataagcat
gaagctgtgcagtttgacatgaattggaaagtgcctgctatcctttattacatcaaaagg
aatcttaattccaaatacaacctgaacatcaagaaccctattgaggcaaacgttctgctg
gctgaagcctcactagcacggaagcagcggaaaacacatactacctttattccattgatg
cttaatgagatgccacaggttggggacctggtgggcctggatgctgagtttgtcaccctt
aatgaggaggaagcggagctgcgcagcgatggcaccaagtcaaccatcaagccaagccag
atgtcagtagcaaggattacgtgtgttaggggccaggggcccaatgagggtatccccttc
attgatgactacatctctacccaggagcaggtggtggattacttgactcagtactcgggg
ataaagccaggagacctggatgccaagatttcctctaagcacctcacaactctaaagtct
acttacttaaagcttcgttttctcatagacattggcgtcaagtttgtgggtcatggtctg
cagaaggacttccgtgtcatcaacctcatggtgcccaaggaccaggtccttgacactgtt
tatctatttcacatgccccgaaaacgaatgatttccctgcgattccttgcttggtacttt
ctagatctgaagattcaaggggagacccatgacagtattgaggatgcccgcacagccctt
cagctttaccgaaaatatctggagctaagcaaaaatggcactgagcctgagtccttccac
aaagtgctgaagggcctttatgagaaaggccgaaagatggactggaaggtgcctgagcct
gagggccagacaagtcccaagaatgcagctgtcttctcttcagtgctggcgctctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (17)   
   UniProt (2)   
   RefSeq(pep) (15)   
DNA sequence (29)   
   RefSeq(nuc) (27)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (70)   

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