KEGG   Sus scrofa (pig): 100511132
Entry
100511132         CDS       T01009                                 
Symbol
BICD1
Name
(RefSeq) protein bicaudal D homolog 1 isoform X3
  KO
K18739  protein bicaudal D
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100511132 (BICD1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100511132 (BICD1)
   04131 Membrane trafficking [BR:ssc04131]
    100511132 (BICD1)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Cargo complex
     100511132 (BICD1)
Membrane trafficking [BR:ssc04131]
 Endosome - Golgi transport
  Rab GTPases and associated proteins
   Rab associated proteins
    100511132 (BICD1)
SSDB
Motif
Pfam: BicD Bap31_Bap29_C Med4 HALZ DUF1759 ADIP ATG17_like
Other DBs
NCBI-GeneID: 100511132
NCBI-ProteinID: XP_003126445
Ensembl: ENSSSCG00000000531 ENSSSCG00000024369
UniProt: A0A8D1A040 A0A4X1VQ10
Position
5:complement(41897611..42143668)
AA seq 974 aa
MAAEEVLQTVDHYKTEIERLTKELTETTHEKIQAAEYGLVVLEEKLTLKQQYDELEAEYD
SLKQELEQLKEAFGQSFSIHRKVAEDGETREETLLQESASKEAYYLGKILEMQNELKQSR
AVVTNVQAENERLTAVVQDLKENNEMVELQRIRMKDEIREYKFREARLLQDYTELEEENI
TLQKLVSTLKQNQVEYEGLKHEIKRFEEETVLLNSQLEDAIRLKEIAEHQLEEALETLKN
EREQKNSLRKELSQYITLNDNHISISVDGLKFAEDGSEPNNDDKMNGHIHGPLVKLNGDY
RTPTLRKGESLHPVSDLFSELNISEIQKLKQQLMQVEREKAILLANLQESQTQLEHTKGA
LTEQHERVHRLTEHVNAMRGLQSSKELKELDGEKGRDSGEEAHDYEVDINGLEILECKYR
VAVTEVIDLKAEIKALKEKYNKSVENYTEEKAKYESKIQTYDEQVTSLEKTTKESGEKMA
HMEKELQKMTSIANENHNTLNTAQDELVTFSEELAQLYHHVCLCNNETPNRVMLDYYRQS
RVTRSGSLKGPDDPRGLLSPRLARRGVSSPVETRTSPEPVPKENPEASKEPSPTKTPTIS
PVITAPPSSPVLDTSDIRKEPMNIYNLNAIIRDQIKHLQKAVDRSLQLSRQRAAARELAP
MIDKDKEALMEEILKLKSLLSTKREQIATLRAVLKANKQTAEVALANLKNKYENEKAMVT
ETMTKLRNELKALKEDAATFSSLRAMFATRCDEYVTQLDEMQRQLAAAEDEKKTLNTLLR
MAIQQKLALTQRLEDLEFDHEQSRRSKGKLGKSKIGSPKVSGEASVTVPTIDTYLLHSQG
PQTPNIRVSSGTQRKRQFSPSLCDQSRPRTSGASYLQNLLRVPPDPTSTESFLLKGPPSM
SEFIQGHRLSKEKRLTVAPPDCQQPAASVPPQCSQLAGRQDCPTVSPDVALPEEQPHSSS
QCAPLHCLSKPPYP
NT seq 2925 nt   +upstreamnt  +downstreamnt
atggccgcggaggaggtattgcagactgtggaccattataagaccgagatagagaggttg
accaaggagctcacagagacgacccacgagaagatccaggctgccgagtatgggctggtg
gtactagaagagaagctgaccctcaaacagcagtatgacgagctggaggctgagtacgac
agcctcaaacaggagctggagcagctgaaagaggcattcgggcagtccttttccatccac
cggaaagttgctgaggatggagagactcgggaggaaacgcttctgcaggagtcagcctcg
aaggaagcttactatctggggaagatcttggagatgcagaacgagctgaagcagagccgg
gctgtggtcactaacgtgcaggcagaaaatgagaggctcacagctgtcgtgcaggatctg
aaggagaacaatgagatggtggagctacagcgaatacggatgaaggatgaaatccgagaa
tataaattccgcgaggcccgccttcttcaggattatactgaactagaagaggaaaacatc
accctgcagaaactggtgtccacattaaagcagaaccaggttgaatatgaaggcttaaag
catgagattaagcgatttgaggaggagacagtactgctgaacagccagctggaggatgcc
atccgtttgaaagagatcgctgagcaccaactggaagaagcccttgagaccttaaaaaat
gaaagggagcagaagaacagcctgcggaaggagctctcccagtacatcaccctcaatgat
aaccatatcagcatctcagtcgatggactcaagtttgctgaggatgggagtgaaccaaac
aacgatgacaaaatgaacgggcatattcacgggccccttgtgaaactgaatggagactat
cggactcccactttaaggaaaggagagtctctgcaccctgtttctgacttattcagtgag
ctgaacatttcagaaatacagaaattgaagcagcaacttatgcaggtagagcgggaaaag
gccattcttctggccaatctccaggagtcacagacacagctggaacacaccaagggggcg
ctgacagagcagcacgaacgggtgcatcggctcacagagcacgttaatgccatgaggggc
ctgcagagcagcaaggagctcaaggaactggatggggagaagggccgggactcaggggag
gaggctcacgactatgaggtggacatcaatggcttagagatccttgagtgcaaatacagg
gtagcagtaactgaggtgatcgatttgaaagctgaaattaaggccttaaaggagaaatat
aataaatctgtagaaaactataccgaagagaaggccaagtatgagagtaagattcaaacg
tatgatgagcaggttacaagccttgagaagaccaccaaggagagcggagagaagatggct
cacatggagaaggagttgcaaaagatgaccagcatagccaatgaaaatcacaataccctt
aatacagcccaggatgagttggtgacatttagtgaagagctagctcagctttaccaccat
gtatgtctgtgtaataatgaaacgcctaacagggtcatgctggactattacaggcaaagt
agagtcacccgtagtggcagcctgaaagggcccgatgaccccaggggacttttgtctcca
cggttagccaggcggggtgtgtcatccccagtagaaacaaggacctcacctgaaccagtt
ccaaaggaaaacccagaggccagcaaagaaccaagcccaaccaagacccccaccatctct
cctgttattactgccccaccatcatctccagtgttggacacaagtgacatccgcaaagag
ccaatgaatatctacaaccttaatgccataatccgggaccaaatcaaacatctgcagaaa
gctgtggaccggtccttgcaactgtctcgtcaaagagcagcggcacgggagctagccccc
atgatcgataaagacaaggaagccctaatggaagagatcctcaagctcaagtccctgctg
agcacaaaacgggagcagatcgccacactgagagcagtgctgaaggccaacaaacagaca
gctgaggtggctttagctaacctcaagaacaaatatgaaaatgaaaaggcaatggtgacg
gaaacgatgacgaaacttagaaatgaactgaaggctttgaaagaagatgcagcaactttc
tcatccctgagagcaatgtttgcaacaagatgtgatgaatatgtcacacagttggatgag
atgcagagacagttagcagctgcagaggatgagaagaagactctaaacactttgttacga
atggctatccagcaaaaactcgccctgacccagcggctggaggacttagagtttgaccat
gagcagtcccgacgcagcaaaggcaaacttgggaagagcaagatcggcagccctaaagta
agtggggaggcatcagtcaccgtgcccaccatagacacttacctcctgcatagtcagggc
ccacagacacccaacattcgggtcagcagtggcactcagaggaaaagacaattttcacct
tccctttgtgatcagagccgtcccaggacttcaggggcttcctacctacagaatttatta
agagttccccctgatcccacctccacagagtcatttcttctgaagggccccccttccatg
agtgaattcatccaagggcaccggctcagcaaggaaaaaaggttaaccgtggctccacca
gattgtcagcagcctgctgcctccgtaccgccacagtgctcacaactagccgggaggcaa
gactgtccgactgtcagtcctgacgtagctctccccgaggagcagccacattccagctcg
cagtgcgcccctctccactgtctctccaagcctccttacccctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (2)   
   OC (1)   
Protein sequence (14)   
   UniProt (2)   
   RefSeq(pep) (12)   
DNA sequence (12)   
   RefSeq(nuc) (12)   
Protein domain (7)   
   Pfam (7)   
All databases (60)   

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