KEGG   Sus scrofa (pig): 100518066
Entry
100518066         CDS       T01009                                 
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100518066 (POLR1A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssc03021]
    100518066 (POLR1A)
Enzymes [BR:ssc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100518066 (POLR1A)
Transcription machinery [BR:ssc03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     100518066 (POLR1A)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 NOA36
Other DBs
NCBI-GeneID: 100518066
NCBI-ProteinID: XP_005662463
Ensembl: ENSSSCG00000008226
UniProt: A0A8D1IL37
Position
3:58670377..58750441
AA seq 1720 aa
MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDS
KEVCSTCVQDFNNCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
LCQLRVLEVGALQAVYELERILYRFLEENPDPTASEIQEELEQYTATIVQNNLLGSHGSH
VKNVCESRSKLIASFWKAHMTAKRCPHCRTGRSVVRKEHNSKLTITYPAMVHRKADQKDA
EPQAPGIEEAQMGKRGYLTPLSAQDHLIALWKNEGFFLNYLFLGLEDVGLESRFNPSMFF
LDFLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPCEVAAP
APDEEKDSSTAMDRSFLSLLPGQSLTDRLYNIWIRLQSHVNIVFDSEMDKLTMEKYPGIR
QILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQ
ELRQAVINGPTVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTPATGAPKPQGTKIV
CRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHF
PQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVY
RGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDQIPLNLLGKAKIGGKAWVK
EAPRPVPGFNPNLMCESQVVIRDGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVL
TCLARLFTAYLQLYRGFTLGVEDILVKPRADVRRHRIIEESTRCGPRAVRAALNLPEAAS
CDEVRGKWQDAHLSKDQRDFNMIDLKFKEEVNHHSNEINKACMPLGLHRQFPENNLQMMV
QSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTG
IRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL
YGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLREVLSKAEPKKALRHFRAIKKWQSR
HSNSLLREGAFLNYSQKIQAAVKALNLEGANQNGRSPETHQVLRMWSELDEQSRRKYQKK
AAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSLEWAAQAEKSHEKSELSLERLRTLLQL
KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN
IKTPMMSVPVFNTRRALKKVKSLKKQLTRVCLGEVLEKIDVQESFSMGEKQAKFRVYQLR
FQFLPYACYQQEKCLRPEDILHFMETRFFKILMESIKKKNNKASTFRNVNTRRATQRDLD
DSGESERTRGDREGDDEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEDEEKEED
EKEDEDIQEEGSIRGEGFHQEQEEEEGLGPEEDSLPAAPLTQPRKPTRSREPQGAEAVER
RVRAVRECHPLIEDYQYDTEASLWCQVTVKLPLMKVNFDMSSLVVSLAQGTVVYATKGIT
RCLLNETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRV
IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQF
LKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELKQPLR
NT seq 5163 nt   +upstreamnt  +downstreamnt
atgttgggctcaaagaacatgccctggcggcggctgcagggcatttccttcgggatgtat
tcagccgaagagctcaagaagttaagcgtcaagtccatcacgaaccctcggtatctggat
agcctggggaacccttcggcaaatggcctgtatgacttagccctgggccctccggattcc
aaagaggtgtgctccacctgtgtgcaggacttcaacaactgccccgggcacctgggccac
atcgaactcccgctcactgtgtacaatcctctgctctttgataaactttacctgctgctc
cggggatcctgtttaaactgtcacatgctgacttgtccccgggctgtgattcacctccta
ctctgccagctgagagttctggaagtcggggccctgcaagcagtgtacgagctcgagaga
attctatacaggtttctggaagaaaatcctgatcctacggcctctgaaattcaggaggag
ttagagcagtatacagccacaatcgtacagaacaacctcttgggatcccatggctcacat
gtgaaaaacgtctgcgagagcaggagcaagctcattgcttctttctggaaggcgcacatg
actgccaagcgatgcccccactgcagaaccgggcggtcagttgtccgcaaggagcacaac
agcaaactgacgatcacgtacccagccatggtacacaggaaggctgaccagaaggacgcc
gagcctcaggctccaggaatcgaggaagctcagatgggaaaacgaggatacttgacgccc
ttgagtgcccaagatcatctcattgccctctggaagaacgaagggttctttctgaattac
ctctttttgggactggaagatgttggcctggaatccaggttcaatcccagtatgttcttt
ctggatttcttggtggtgcccccctcaaggtatcggcccgtcaaccgcctaggggaccag
atgtttaccaacggccagacggtgaacctgcaggctgtcatgaaggacgtggttctgatc
cgaaagcttctggcgttgatggctcaagaacaggagctgccgtgtgaggtggcggcacca
gctccagatgaggaaaaagactcttcgactgctatggaccgatcctttttgagtctgctt
ccaggccagtccctcacagacagactttacaacatttggattcgccttcagagccacgtc
aatattgtgtttgacagcgagatggacaaattaacaatggaaaagtaccctggcattaga
cagatcttggagaagaaggatggcttattccgaaagcacatgatgggaaagcgagtagac
tacgcagcccgctcggtcatctgcccagacatgtatatcaacaccaacgaaattggaatt
cccatggtgtttgccacaaagctgacctaccctcagccggtcaccccctggaacgttcag
gaactgaggcaggcagtcatcaacgggcccaccgtgcacccaggggcctccatggtcatc
aacgaagacggcagccgcacagccctgagtgcctcggacctcacccagcgggaagccgtg
gccaaacagctcctgacgcccgccacgggggcacccaagccccaggggacaaaaattgtg
tgccggcatgtgaaaaatggagacattctcctcctgaaccgacagcccaccctgcaccgg
ccctccatccaggcgcatcgtgcccgcatcctgcccgaggaaaaggtcctgcggctccac
tatgccaactgcaaggcctacaatgctgactttgatggagacgagatgaacgcccacttc
cctcagagtgaactgggccgggccgaggcctacgtcctggcttgcacagaccaacagtac
cttgtgcccaaggatggccaaccactggcaggattgatccaagatcacatggtttcaggg
gcaaacatgaccatccgaggctgctttttcactcgggagcagtatatggagctggtgtac
cggggactcacagacaaagtagggcgcgtgaagctctttcctcccgccatcctgaagccc
tttccactgtggacaggaaagcaggtcgtgtccacgctgctcatcaacataatcccggag
gaccagatcccactgaacttattgggaaaggcaaagattggtggcaaagcttgggtgaag
gaggctcctcggcccgttcccggctttaaccccaacttgatgtgcgagtcccaggtggtc
atcagggacggggagctgctgtgcggggtgctggacaaggcacattacgggagctccgcc
tacggcctggtccactgctgctacgagatctatggcggggagaccagcggcaaggttctc
acttgcctggcccgcctcttcaccgcctacctgcagctctatagaggcttcaccttgggc
gtggaggacattttggtcaagccgagggctgatgtccggagacacaggatcattgaagag
tccacccgctgtggtccccgggctgtcagggccgcattaaacttgccagaagcggcatcg
tgtgatgaagtccgagggaaatggcaggatgcccatctgagcaaagaccagagggatttt
aacatgattgatctgaagttcaaggaggaagtgaaccatcacagcaatgaaattaacaag
gcgtgcatgcctttgggcctgcacagacagttcccagagaacaacttgcagatgatggtc
cagtcgggagccaagggttcaactgtgaacaccatgcagatctcgtgcctgctgggtcag
atcgaactggaaggccggagacccccactgatggcatccggcaagtctctgccctgcttc
gagccttatgagttcacccccagggctggcggcttcgtcactggcagattccttacaggc
atcaggcctcctgagttcttcttccactgcatggccgggcgagaggggctggtggacact
gcggtgaagaccagccgctcgggctatctccaaaggtgcatcatcaagcacctggagggg
ctggtcgtccagtatgacctgacggtccgggacagcgacggcagcgtggtgcagttcctg
tacggggaggacggcctggacatccccaagacacagttcctgcagcccaagcagttcccc
ttccttgccagcaactacgaggtgataatgaaatcgaagcatctccgtgaggttttatcc
aaagcagagcccaaaaaagctctccgccacttcagagccatcaagaaatggcaaagcaga
cattctaactccctgctgagggagggcgccttcttgaactattcccagaagattcaggca
gctgtgaaagctttgaacctcgagggcgcaaaccagaacggccgcagccctgagactcac
caggtgttgaggatgtggagtgagttggatgagcaaagccgaaggaaataccagaagaag
gcggctccttgtcccgaccccagtctgtctgtgtggcgcccggacatctacttcgcatca
gtgtcagaaacgtttgagaagaagatggatgactacagccttgagtgggcagcccaggca
gagaagagtcacgagaagtcggagctctctctcgaaaggttgaggactctgctgcagctg
aagtggcagcgctcgctgtgcgacccaggtgaggccgtgggcctgctggccgcccagagc
atcggggagccctccacacagatgaccctgaacaccttccactttgccggcagaggcgag
atgaacgtcaccctgggcatcccaaggttgagggagatcctcatggtggccagcgccaac
atcaagacgcccatgatgagtgtgcctgtgttcaacaccaggagagcgctgaagaaagtg
aaaagcctgaagaagcaactcaccagggtgtgcctcggggaggtgttggagaaaattgac
gtccaggagtccttctctatgggagagaaacaggccaagttccgggtgtatcagctgcgg
tttcagttcctgccatacgcctgctaccagcaggagaagtgcctgagacccgaggatatc
ctgcacttcatggaaacaagattctttaaaattctgatggaatccatcaagaagaagaac
aataaagcatcaacttttaggaacgtgaacacacggagagctacccagcgggatctggat
gactctggggagtcagagaggactcggggagatcgggaaggtgacgatgaagaggagggg
cacattgtggatgccgaagcagaggagggagatgctgacgcctcggatgccaaacgcaag
gagaaacaagaggaggaggtcgattacgagagtgaggaggacgaggagaaggaggaggac
gagaaggaggacgaggacatccaggaggaagggagcatccgaggagaaggtttccaccag
gagcaggaggaggaggagggcttgggcccggaggaggactcactccctgcagcccccctg
acgcagcctcggaagcccacccgcagccgggagccccagggcgccgaggcagtggagcgc
cgggtgcgggccgtgcgagagtgccacccactcatcgaggactaccagtatgacaccgag
gccagcctgtggtgccaggtgacagtgaagctcccgctcatgaaggtcaactttgacatg
agctccctggtagtgtccttggcacaaggcactgtcgtctatgcgaccaagggcatcacg
cggtgcctcctgaatgaaaccaccaacagtaagaatgagaaggagctggtcttaaacacg
gaaggcatcaacctcccggagctgttcaagtacgctgaggtcctggatttgcgccgcctc
tattccaatgacatccacgcgatggccaacacatatggcatcgaggcagcgctgcgggtg
atcgagaaggagatcaaggacgtgttcgccgtgtacggtatcgccgtggacccccgccac
ctctccctggtcgctgactatatgtgcttcgagggtgtttacaagccactgaaccgcttt
gggatccggtccaactcctcccctctgcagcagatgacgtttgaaaccagcttccaattt
ctgaagcaggccaccatgatggggtcccacgacgagctgaggtctccgtccgcctgcctc
gtggtcgggaaggttgtcagaggtgggacgggcctgtttgagctcaagcagcccctgaga
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (43)   

Download RDF
DBGET integrated database retrieval system