KEGG   Sus scrofa (pig): 397043
Entry
397043            CDS       T01009                                 
Symbol
PSMC5
Name
(RefSeq) 26S protease regulatory subunit 8
  KO
K03066  26S proteasome regulatory subunit T6
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03050  Proteasome
ssc05010  Alzheimer disease
ssc05012  Parkinson disease
ssc05014  Amyotrophic lateral sclerosis
ssc05016  Huntington disease
ssc05017  Spinocerebellar ataxia
ssc05020  Prion disease
ssc05022  Pathways of neurodegeneration - multiple diseases
ssc05169  Epstein-Barr virus infection
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    397043 (PSMC5)
 09160 Human Diseases
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    397043 (PSMC5)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    397043 (PSMC5)
   05012 Parkinson disease
    397043 (PSMC5)
   05014 Amyotrophic lateral sclerosis
    397043 (PSMC5)
   05016 Huntington disease
    397043 (PSMC5)
   05017 Spinocerebellar ataxia
    397043 (PSMC5)
   05020 Prion disease
    397043 (PSMC5)
   05022 Pathways of neurodegeneration - multiple diseases
    397043 (PSMC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:ssc03051]
    397043 (PSMC5)
Proteasome [BR:ssc03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    ATPase subunits
     397043 (PSMC5)
SSDB
Motif
Pfam: AAA AAA_lid_3 Prot_ATP_ID_OB_C AAA_2 AAA_5 AAA_16 AAA_22 nSTAND3 PRS7_OB RuvB_N TIP49 AAA_18 Mg_chelatase AAA_3 AAA_28 AAA_14 AAA_17 Parvo_NS1 ATPase AAA_33 PhoH FapA IstB_IS21 AAA_24 AAA_7 AAA_25 DUF815 bpMoxR Sigma54_activat RNA_helicase DUF5906 Zeta_toxin AAA_19 AAA_11 TsaE Prominin HR1
Other DBs
NCBI-GeneID: 397043
NCBI-ProteinID: NP_999148
Ensembl: ENSSSCG00000017287
UniProt: P62197 A0A480W4X5
Position
12:complement(15101946..15106326)
AA seq 406 aa
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR
EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI
LDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK
GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
NT seq 1221 nt   +upstreamnt  +downstreamnt
atggcgcttgacgggcctgagcagatggagctggaagaggggaaggcaggcagtggactc
cgccagtattatctgtccaagattgaagaactccagctgattgtgaatgacaagagccag
aatctccgcaggctgcaagcacagaggaatgagcttaatgcaaaagttcgcctgttgcga
gaggagctacagctactgcaagaacagggctcctatgtgggggaagtagtccgggccatg
gacaagaaaaaagtgttggttaaggtgcatcccgagggcaagtttgtcgtagacgtggac
aagaacatcgacatcaatgatgtgacacccaactgccgggtggctctcagaaatgacagc
tacactttgcacaagatcctgcccaacaaggtagacccactggtgtcactgatgatggtg
gagaaagtgccagattcaacttacgagatgattggtggactggacaagcagatcaaggag
atcaaagaagtgatcgagctgcccgtgaagcatcctgagctctttgaagcgctgggcatt
gcacagcccaagggagtgctgctatacggacccccaggcactgggaagacactgctggcc
cgagctgtggcccatcatacagactgcacctttattcgcgtctctggctctgagctggta
cagaaattcattggggaaggggcaaggatggtgagggagctgtttgtcatggcccgagaa
cacgctccatctatcatcttcatggacgaaatcgactccattggctcctcgcggctggaa
gggggctctggaggggacagtgaagtccagcgcacgatgctggagctgctcaaccagctg
gacggcttcgaggccaccaaaaatatcaaggttatcatggccactaataggattgacatc
ctggactcggcgctgctccgcccagggcgcatcgacagaaaaattgaattcccacccccc
aacgaggaggcccggctggacattttgaagatccattctcggaaaatgaacctgacccgg
ggcatcaacctgagaaaaattgctgagctcatgccaggagcatcaggcgctgaagtgaag
ggcgtgtgcaccgaagccggcatgtacgcgctgcgcgaacggcgagtccacgtcacccag
gaggactttgagatggccgtagccaaggtcatgcagaaggacagcgagaaaaacatgtcc
atcaagaagctatggaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (9)   
   KEGG PATHWAY (9)   
Genome (1)   
   KEGG GENOME (1)   
Gene (302)   
   KEGG ORTHOLOGY (1)   
   RefGene (297)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (10)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (15)   
   RefSeq(nuc) (7)   
   GenBank (4)   
   EMBL (4)   
Protein domain (37)   
   Pfam (37)   
All databases (376)   

Download RDF
DBGET integrated database retrieval system