KEGG   Staphylococcus pseudintermedius HKU10-03: SPSINT_0166
Entry
SPSINT_0166       CDS       T01396                                 
Name
(GenBank) Transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ssd  Staphylococcus pseudintermedius HKU10-03
Pathway
ssd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ssd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SPSINT_0166
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssd03400]
    SPSINT_0166
Enzymes [BR:ssd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SPSINT_0166
DNA repair and recombination proteins [BR:ssd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      SPSINT_0166
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD CarD_TRCF_RID Helicase_C ResIII MFD_D3 UB2H RecG_dom3_C DUF1421 Glyco_hydro_115 AAA_22 DUF948 IstB_IS21 KGK
Other DBs
NCBI-ProteinID: ADV04695
Position
183069..186581
AA seq 1170 aa
MKSIINEIINRDSRFKDLAEQVGQSNVLVTGLTPAAKASIIAELYQSDHRQVVLVTNNLY
QADKIEADLLQFVPDDEVYKYPVQDMMTEEFSTQSPELMSERVRTLTALANDRRGLFIVP
LNGLKKLLTPKEMWRDHQMTFEVGDDIEIDALLEKLVSMGYRRESVVSNIGEFSVRGGII
DVYPLLGEPIRIELFDTEVDSIRQFDVETQRSSENIDSAEITTAHDYIMTEAVRQQMMTA
LKSAYETTRPKIDKSVRQDLKETYDSFQMVEDTHFDPQILRRLVAFMYEKPTTILDYLKD
NAIILVDEYNRVRETEESLSVETEDFLQNLIESGKGFIGQRFMDDEAFDRMLRQFKITFF
TLFTASMQMKLDDMIKFSCKPVQQFYGQYDIMTSEFQRYMRQEDRVVVMVETATKKERIQ
AMLSEMHIPTLLEPDVDTMAAGHAAIIEGSLSEGFELPYMSLVVVTERELFKSKQKKSTK
KRRKTLSNAEKIKSYQELNVGDYVVHVHHGVGRYLGVETLAVGDVHRDYIKIQYQGTDQL
FVPVDQMEQVQKYVGSEDKSPKLYKLGGSEWKKTKAKVQRSVEDIADELIALYKEREQSV
GYQFGPDTAEQYAFEMDFPYDLTDDQAKSIIEIKNDMESQRPMDRLLCGDVGYGKTEVAV
RAAFKAVMSGKQVAFLVPTTILAQQHYETLIERMRDFPVEIHLMSRFRTPKEVRETKEGL
KSGFVDIVVGTHKLLGKTVEYKDLGLLIVDEEQRFGVRHKEKIKQLKANVDVLTLTATPI
PRTLHMSMLGVRDLSIIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNRV
SSIYEKREQLQMLMPDASIGVAHGQLPERDLEETMLDFINGEYDILVTTTIIETGVDVPN
ANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHATNRVLNEVAEERLQAIKEFTEL
GSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPVPELE
LDLKLDAYLPAEYIRNEQAKIEIYKKLRATESMEQLMDIKDELLDRFNAYPTEVEQLLDS
VEIKVHLLHVGVQSVKDTGKTIEILLTPKGTNDIDGEALFKNTIALGRAMKVGVQDGCMK
VTLTKGKQWLESLKFLAKTLEESLRLPHEI
NT seq 3513 nt   +upstreamnt  +downstreamnt
gtgaaatcaataatcaatgaaattataaatagagactcgagatttaaagatttagcagag
caagtcggtcaatccaatgtgctcgtgacaggattaacccctgccgcgaaagcatctatc
attgcggaactttatcaatcggaccaccgccaagttgttttggttacaaataatttatat
caggcggacaagattgaagcagatttattacagtttgttccggatgatgaagtgtataaa
tatcctgttcaagatatgatgacagaagaattttcaacgcaaagcccagaattgatgagt
gaacgcgtacgaacgttaacagcactcgcgaatgatcgtcgcgggttatttatcgtcccc
ttaaatggcttgaaaaagttgctcacacctaaagaaatgtggcgtgaccatcaaatgact
tttgaagtgggcgacgatattgagattgacgcgcttttagaaaaattagtgagcatggga
taccgacgtgaatcggtcgtgtccaatattggtgaattttcggtgcgtggtggcattatt
gatgtgtatccgttactaggtgaaccgattcgaattgaactgttcgatacggaagtggat
tcgattcgtcaattcgatgtagaaacgcaacgttcatcagaaaatatcgacagcgcggaa
attacgacagcgcacgattatattatgacagaggccgtccgacaacagatgatgacagct
ttgaagtctgcttacgaaacgacgagacctaaaattgacaagtcagtacgccaagatttg
aaagagacgtatgatagttttcaaatggttgaggatacgcattttgatccccaaatattg
cgtcgtttagttgcatttatgtatgagaagcctacaaccattttagattaccttaaagat
aatgcgatcattttagttgatgaatacaatcgtgttcgcgaaactgaggaatctttgtcg
gttgaaactgaagactttttacaaaatttgattgaaagtggtaaaggctttatcggacag
cgttttatggatgatgaggcatttgatcgaatgttacgccagttcaaaattacgtttttc
acgttatttactgcctcaatgcaaatgaagttagacgacatgattaagttttcatgtaaa
ccggtccaacaattttacgggcaatacgacatcatgacttctgaatttcaacgctatatg
cgacaagaagaccgtgtcgtcgtcatggtagaaacggcaacgaaaaaagaacgtattcag
gcgatgttaagcgaaatgcatatccctacactgttagagcctgacgttgacacaatggcg
gcgggacatgcggcaatcattgagggcagcttatcagaaggcttcgaactcccttacatg
tcgctcgttgtggtgacagaacgtgaattgtttaagtctaagcagaaaaagagcacgaaa
aagcgtcgtaaaacattaagtaatgcggaaaaaattaaatcataccaagaattgaatgtc
ggcgattatgtcgtgcacgtgcatcatggtgtaggtcgctacctcggcgtggaaacacta
gcggtaggtgatgtacaccgcgactatattaaaattcaatatcaaggcacagaccaactc
tttgtacctgttgatcaaatggagcaagtgcaaaaatatgtaggttcggaagataaatcg
ccaaagctgtataagttaggcggtagtgaatggaagaaaacgaaagcgaaagttcagcgc
agtgtagaagacattgcggacgaactgatagctttatataaagaacgcgaacaatctgtc
ggttatcaatttgggccagatacagcagaacaatatgcgtttgaaatggacttcccatat
gatttaacggatgaccaagcgaaatcgattatcgaaattaaaaatgacatggaaagccaa
agacctatggaccgtctgttatgcggtgacgtaggttacggtaaaactgaagtggctgtc
agagcggcgttcaaagcagttatgtcagggaaacaggtcgcatttttagtaccgacaacc
attttagcgcaacaacattatgaaacgttgattgagcggatgcgtgatttccctgtcgaa
attcatttaatgagccgcttccgtactcctaaagaagtgcgcgagacaaaagaaggtttg
aaatcaggctttgtggacatcgttgtagggacacataaattactcggtaaaacagttgag
tataaagatttaggtttactcattgtcgatgaagaacagcgctttggtgtgcgtcataaa
gaaaaaattaagcagttaaaagcaaatgtcgatgtactgacattaactgcgacaccgatt
ccgcgtacgttgcatatgagtatgttgggcgtgcgtgacctgtcgattattgaaacacca
ccagaaaaccgtttcccagtccaaacgtacgtcctagagcaaaacactaactttattaaa
gaagctttagaacgggaactttctcgagatggccaagtgttttatctctacaaccgtgtc
agttccatatatgaaaaacgtgaacagcttcaaatgttgatgccagacgcttcaattggt
gtcgcgcacggtcaattgccagaacgtgacttggaagaaacgatgctcgactttattaat
ggagagtacgacattttagtgacgacgacgattatcgaaacaggtgtcgatgtaccgaat
gcaaatacactcattattgaagatgccgatcgttttggcttgagccagctgtaccaatta
cgtggacgtgtcggtcgttcgagccgtatcgggtatgcgtatttccttcacgcaacgaac
cgtgtattgaatgaagttgctgaagaacgtctccaagcaattaaagaatttaccgaactt
ggcagtggctttaaaattgcgatgcgtgacttgaacattcggggtgcaggtaacttactc
ggtaaacaacagcacggtttcattgattcggtcggctttgacttgtactcacaaatgtta
gaagaagcggtgaacgaaaaacgtggcattaaagaagaaacgccggttcctgagcttgag
ttagatttgaaactcgatgcatatttaccagctgaatacattcgtaatgaacaagcgaaa
attgaaatttacaagaagttgagagcgactgaaagtatggagcaattgatggatattaaa
gatgaattgcttgatcgtttcaatgcgtatccaacagaggttgagcaattgttagattct
gtagagattaaagtccatctccttcacgtcggtgtgcagtccgtgaaagatacaggcaaa
acgattgaaattttattgaccccaaaaggtacaaatgatattgacggtgaagcgttattt
aaaaatacaatcgcgctcggtcgtgcaatgaaagtcggcgtacaagatggctgtatgaaa
gtgacgttgacaaaaggaaaacaatggctcgaatcactgaaatttttagcgaagacgttg
gaagaaagtttgagactcccgcatgaaatctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (24)   

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