KEGG   Shewanella sediminis: Ssed_4459
Entry
Ssed_4459         CDS       T00596                                 
Name
(GenBank) AMP-dependent synthetase and ligase
  KO
K01897  long-chain acyl-CoA synthetase [EC:6.2.1.3]
Organism
sse  Shewanella sediminis
Pathway
sse00061  Fatty acid biosynthesis
sse00071  Fatty acid degradation
sse01100  Metabolic pathways
sse01212  Fatty acid metabolism
sse02024  Quorum sensing
Module
sse_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:sse00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    Ssed_4459
   00071 Fatty acid degradation
    Ssed_4459
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Ssed_4459
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:sse01004]
    Ssed_4459
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sse04147]
    Ssed_4459
Enzymes [BR:sse01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     Ssed_4459
Lipid biosynthesis proteins [BR:sse01004]
 Acyl-CoA synthetase
  Long/very long chain acyl-CoA synthetase
   Ssed_4459
Exosome [BR:sse04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   Ssed_4459
  Exosomal proteins of breast cancer cells
   Ssed_4459
SSDB
Motif
Pfam: AMP-binding
Other DBs
NCBI-ProteinID: ABV39061
UniProt: A8G1T8
Position
complement(5445862..5447658)
AA seq 598 aa
MSLEQYHLTRLIKQQSQKLGEAIALEGYEMAAPWDLVSWSSFDNINAKVAQALIQFGIEV
QDRTVILSQNCPQWACADIGSLKARTVVVPIYPTSTFEQASYIVNDAKAKLIFVGDKAHY
EMACMLVQHCESLTHIVVFDKSVVLKEYESHIYFDDLLTETHSAEVIAELDKRIEEAELD
DLLSLIYTSGTTGDPKGVMMDYRNIASMIEKHDKVLAFTPGDVSLAFLPLSHVFERDWSF
YVLSRGGHNVYLQNPMAVKEAIVAVRPHTLCVVPRFLEKVYSAVQDKVIKAPELRQKMFT
WAMSVGHRQSEVGQGRHKASLGLSLQWKLADKLVFSKLKQVLGGRLKFMPCGGAALDPNV
SAFFQSIDVPVLCGYGMTETNATITCNTLSNRVPGSNGKPLPDMEIKLGKDNEIMVRGGT
VMRGYYNRPEDTAEAFEDGWLKTGDAGRIDEEGNLFITDRIKELMKTSNGKYIAPQRVEG
KVGCCPFIEQVAIVADAKNYVTALIVPAFEALEEWAKEKGIHYESPMELLRNSRVVEHFE
NRLKELQSDLAGFEKIKKFTLLPEAFSMEAGLITPTMKLRRKVIYNKYAREINAMYAR
NT seq 1797 nt   +upstreamnt  +downstreamnt
atgtcactcgagcagtatcatttaacacgtttaatcaaacagcaaagccagaaacttggt
gaagctatcgcgctcgaagggtacgaaatggcggccccttgggatctggtgagttggagc
tcatttgataatatcaacgccaaggttgcccaggcattgattcaatttggtatcgaagtc
caggatcgtaccgttattttgtcgcaaaattgtccccagtgggcttgtgcagatatcggt
agtctcaaagcgcgtacagttgttgtgcctatctacccgacgagtaccttcgagcaagct
agttatatcgtgaatgatgccaaggcgaagctgatatttgtcggcgataaagcgcattat
gagatggcctgtatgctggttcagcattgcgaaagcttaactcatatcgtggtattcgat
aaaagtgttgtccttaaggaatatgagagccatatctactttgacgatcttctcactgag
acgcattctgccgaagtgatcgccgaattggataagcgtatagaagaggccgagttagat
gatcttctctcgttaatctatacctcaggtacgacaggtgatcctaaaggtgtaatgatg
gattaccgtaatatcgcctctatgatcgagaagcatgataaggtgctggccttcactccc
ggtgatgtttctctcgctttcttacctctaagtcacgtgtttgagcgtgattggagtttc
tacgttttgagccgtggaggccataacgtctatctgcaaaatccgatggcagtaaaagag
gctatcgttgcggttcgtcctcatacactctgtgtcgtgcccagattcttagaaaaagtg
tacagcgccgtccaagataaagtgataaaagcaccagagttaaggcagaagatgtttacc
tgggcgatgtctgtcggacatcgtcagtctgaagtcggtcaggggcgacataaggcgtct
ttgggtctgagcttgcagtggaagctggccgataagctggtttttagtaagctcaagcaa
gtactgggtggacgtcttaagtttatgccatgtggtggcgctgctttagaccctaacgtc
agtgcttttttccagagtattgatgtacctgttttatgtggttacggcatgaccgaaacc
aatgccactatcacctgtaataccttgtctaaccgagtgcctggatctaatggtaagcca
ttgcctgatatggaaattaagttaggcaaagataatgagatcatggttcgcggcggaact
gtgatgcgcggttattataatcgcccggaagatactgccgaagcattcgaggatggctgg
ctgaaaaccggcgatgcgggtcgtatcgatgaagaggggaacttgttcatcaccgaccga
attaaagagttgatgaaaacctcaaatggtaagtatatcgctcctcaacgtgtcgaaggt
aaggtgggatgttgtcctttcatcgaacaggttgccatcgtagccgatgcgaaaaactat
gtgacggccctgattgtgccagccttcgaagcgctcgaagagtgggcgaaagagaaaggc
attcactatgagtcgccgatggagttgttgcgtaacagccgtgtggtagagcatttcgag
aatcgtcttaaggagctgcagtcagatctggcaggatttgagaagattaaaaagtttacc
ctgttacccgaggccttctcaatggaagcgggtctgatcactccgacgatgaagctgcgt
cgtaaggttatttacaataagtatgcccgtgagatcaatgcgatgtacgcgagatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (27)   

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