KEGG   Streptococcus suis D12 (serotype 9): SSUD12_1924
Entry
SSUD12_1924       CDS       T02021                                 
Symbol
polC
Name
(GenBank) DNA polymerase III PolC
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
ssk  Streptococcus suis D12 (serotype 9)
Pathway
ssk03030  DNA replication
ssk03430  Mismatch repair
ssk03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ssk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SSUD12_1924 (polC)
   03430 Mismatch repair
    SSUD12_1924 (polC)
   03440 Homologous recombination
    SSUD12_1924 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ssk03032]
    SSUD12_1924 (polC)
   03400 DNA repair and recombination proteins [BR:ssk03400]
    SSUD12_1924 (polC)
Enzymes [BR:ssk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SSUD12_1924 (polC)
DNA replication proteins [BR:ssk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SSUD12_1924 (polC)
DNA repair and recombination proteins [BR:ssk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SSUD12_1924 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NII DNA_pol3_a_NI HHH_6 tRNA_anti-codon HHH_3 RNase_H_2 B
Other DBs
NCBI-ProteinID: AER20189
UniProt: G7SIM1
Position
complement(1914552..1918943)
AA seq 1463 aa
MSDKFQLLLQQIGIPLDARQSGAFSTAAIEKVVLHKVSKLWEFTFRFETPLPLMDYQLFK
ARLATEFEKVGNKIQFSIVSDAEAFEAGLVEAYYPEAFTEDLCQSAGFKALFQPLEVAYR
DGVLWIKGPETIDTDHFRKNHLPNLVEQYKRFGFGNLAVDIQVCQEMTQQQAEIFHAQNE
EIYQQANEENLAALEQLAQMAPPPEAAQPFVPEYKKNRPAKVNIEKAEITPMIEVDSEEN
RIVFEGLVFEVEQKTTKTGRVIINFKMTDYTSSFTLQKWAKNEEEAQKFDMVKKGNWLRV
RGNVETNNFTRDLTMNVQEVQEVKKEIRKDLMPEGEKRVEFHAHTNMSTMDALPAVEDLV
ARAAAWGHKAVAITDHGNVQSFPHGYHAARKAGIKPLFGMEANIVEDSVPIAYNEADVVL
SDATYVVFDVETTGLSAVNNALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFTTDLTGIT
DEHVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPLISQPVIDTLEF
ARNLYPDFKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFLKDALEKHNLTNLNQL
NTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVSLSNTKYFEGVPRIPRTVLNAHREG
LILGTACQEGEVFDDLLSKGIDEAVKTAAYYDFIEVMPPALYAPMIAKEQFKDMAEIEET
IKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPAPL
PKAHFRTTSEMLDEFAFLGESLAREIVITNPNAMLDRFDDVQVVKTDLYTPYIEKAEETV
AELTYQKAFEIYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVHRSNERGYLVGSR
GSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLPDKDCEKCGTKYKK
DGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAFRAGTVGTVAAKTA
YGFVRGYERDYGKFYRDVEVERLAAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPA
DDVTANWQTTHFNFHDIDENVLKLDVLGHDDPTMVRKLQDLSGIDPQTIPADDKGVMALF
SGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFAELLQLSGLSHGTDVWLG
NAQDLIKAGIADLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISEEERNGY
IQAMKDNKVPDWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHYPIYYYCAYFSIRAK
AFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLERGFKFGKLDLY
KSHATDFLIEDDTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKRGGLSGTLVEK
MDEMGILGKMPEDNQLSLFDDLF
NT seq 4392 nt   +upstreamnt  +downstreamnt
atgtcagataagtttcaactcttgctacaacaaatcggaatacctcttgatgcacgacaa
tcaggggctttttcgactgcagcgattgagaaagtagtcttgcacaaggtcagcaaactt
tgggaatttaccttccgttttgaaacccccttgccgctcatggactatcaactcttcaag
gctcgtttggcaacggagtttgaaaaggtgggcaataagattcaattttctattgtcagc
gatgcggaggcttttgaagctggtttggtagaagcatattatccagaagcttttacggaa
gatttgtgccagagtgcaggcttcaaggctctttttcagccattagaggtggcttataga
gatggtgttttgtggataaaaggtcctgaaaccattgacacagatcattttcggaagaat
catctgccaaatcttgtggagcaatacaagcgatttggttttggtaatcttgcggtggac
atccaagtctgtcaggaaatgacgcagcaacaagcggagattttccatgcgcaaaatgaa
gaaatttaccagcaggctaatgaagaaaacttggcggcccttgaacaactagctcaaatg
gcgccaccaccagaggcagctcagccatttgtcccagaatataagaaaaatcgtcctgcc
aaggtcaatatcgaaaaggctgagattacgcctatgattgaggtggatagcgaggagaat
cggattgtctttgagggtcttgtctttgaggtcgagcagaagacgaccaagacggggcgg
gtcattatcaactttaagatgaccgactatacttcgtccttcaccttgcagaagtgggct
aagaatgaggaagaggctcagaagtttgatatggtcaaaaagggaaactggctgcgggta
cgtggaaatgtggaaaccaataatttcactcgtgatttgactatgaacgtacaggaagtc
caggaggtcaagaaggaaatccgcaaagatcttatgcctgagggtgagaaacgggtcgag
tttcatgctcataccaacatgtctaccatggatgccctgcctgccgttgaggacttggtg
gcgcgtgcggcagcttggggacacaaggcggtggccattaccgaccacggcaatgtccag
tccttccctcatggctatcatgctgcccgtaaagctgggattaagcccctcttcgggatg
gaggctaatattgtcgaggactctgtgcccattgcttacaacgaagcagatgtagtcctg
tctgatgccacctatgtggtctttgacgtggaaacaaccggtctgtctgcggtcaataat
gccctgattcagattgcagcatctaagatgcacaagggcaatatcattgcagaatttgat
gagtttatcgatccaggtcatccgctcagtcaatttacaacagatctgacaggaatcaca
gatgagcatgtgcgtggttctaaacctctagaacaagtcctgcgtgagtttcaagatttc
tgtcaagattccgtcatggttgcccacaacgcgacctttgacgttggctttatgaatgtc
aactatgaacgagcaggcttacctcttattagccagcctgtcattgataccttggaattt
gctcgtaacctttaccccgactttaagcgtcatggtttaggtcctctcaccaagcggttt
ggtgttgctcttgaacaccaccacatggccaactacgatgcggaggcgacagggcgcctg
ctcttcatcttcctaaaagatgccttggagaagcacaatttgaccaatctcaaccagcta
aatacggagctgattgcggaggattcctataagaaggctcgtgtcaagcatgccacgctc
tatgtgattaatcaggttggtttgaaaaatatgttcaaactggtctctctttccaataca
aagtattttgagggagttccacgtattccacggaccgttctcaatgcccatcgtgaaggt
ttaatattgggaacagcctgtcaagagggcgaggtcttcgatgacttgctctccaaaggg
atagatgaagcggttaaaacggcagcctattatgattttatcgaagttatgccacctgcc
ctctatgctcccatgattgccaaggagcagtttaaggacatggcagagattgaagagact
attaagcagttgattgaggtaggacgtagggcaggtctgcctgttctggcgactggaaat
gtccactacattgacccagaagaggaaatctatcgggaaatcattgtccgtgctctaggt
caaggggcaccgattaactggaccatcggaaatggtgagaatgcccagccagcaccactg
cctaaggctcactttagaacgactagcgagatgttggacgagtttgcattcttgggagaa
agtctggcccgtgagattgtcattaccaatcccaatgccatgctagaccggtttgacgat
gttcaggtagtcaagaccgacctctacacgccttatattgagaaggctgaggaaacggtt
gcggaattgacctatcagaaagcctttgaaatttatggcaatcctcttccagatattatc
gacctgcggattgaaaaggaattaacgtccattctgggtaatggattcgccgtgatttac
ctggcgtcgcagatgttggtgcaccgttccaacgagcggggctacctggtgggttcacgg
gggtctgtcggctccagtttcgttgcgactatgattgggattaccgaagtaaaccctatg
cctcctcactatgtctgtccaaattgtcaacacagtgaatttatcacagatggttcctat
ggttcaggttttgacctgccagacaaggattgtgaaaagtgtgggaccaagtataaaaaa
gatggacaggacattccctttgaaaccttccttggttttgatggagacaaggttcccgat
attgacttgaacttctcaggggatgaccaaccctctgcccatttggatgttcgggatatt
ttcggtgaagaaaatgccttccgtgcaggaacggtaggtacggtagctgctaagactgcc
tatggttttgtaagggggtatgagcgggattacggcaaattctaccgtgatgtagaagta
gaacgcttggctgctggcgcagccggtgtcaaacggacgactggtcagcacccgggggga
attatcgtattccctgactacatggatgtctatgactttacgcctgtccaatatcctgcc
gatgatgtgacggccaactggcagactacccactttaacttccacgatattgatgaaaac
gtcttgaaactcgatgtcctgggacacgatgatccgaccatggttcgcaagttgcaggac
ttgtcaggtattgatccgcagaccattcctgccgatgataagggggttatggctctcttc
tctggtacggaaattctgggagttactccagagcagattgggacaccgacaggtatgcta
ggcattcctgaatttggaaccaactttgtacgtgggatggtggaggaaactaaaccgacc
acctttgcggaactcttgcagctgtctggtctatcccacggtacagacgtatggttgggc
aatgcccaggacttgattaaggcaggaattgccgatctatccacggttatcggttgtcgg
gatgacatcatggtttatcttatgcacgcaggtttgccacccaagatggcttttaacatc
atggagcgggtgcggaagggcttgtggctcaagatttctgaggaagagcgaaacggctac
atccaagctatgaaggataacaaggtgccagactggtacatcgaatcctgtggaaaaatc
aagtacatgttccctaaagcccacgcggctgcttatgttatgatggccttgcgggttgcc
tacttcaaggttcattatccaatctactattactgtgcctatttctctattcgggccaag
gcctttgatttggcaaccatgtccggtggcttggaacgagtcaaggccaagatggaagaa
atcgccctcaagaagaaaaacaatgaagcttcgaacgttgagcaggatctctataccaca
cttgaattggtaaatgaaatgctggaacgaggcttcaagttcgggaaattggacctttac
aagtcccatgcgacggacttcttgattgaagatgacaccctcatcccaccatttgtcgct
atggatggtctgggagagaacgttgctaagcaggttgtggcggcgcgtgcagagggagaa
ttcctctccaagacagaactccgtaagcgtggtggattgtcaggtacactggtcgaaaaa
atggatgaaatgggcatcctcggtaaaatgccagaggataaccagctcagtctctttgat
gatttgttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (24)   

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