KEGG   Streptococcus suis YB51 (serotype 3): YB51_2935
Entry
YB51_2935         CDS       T03173                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ssuy  Streptococcus suis YB51 (serotype 3)
Pathway
ssuy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssuy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YB51_2935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssuy03019]
    YB51_2935
   03016 Transfer RNA biogenesis [BR:ssuy03016]
    YB51_2935
Enzymes [BR:ssuy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     YB51_2935
Messenger RNA biogenesis [BR:ssuy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     YB51_2935
Transfer RNA biogenesis [BR:ssuy03016]
 Prokaryotic type
  tRNA degradation factors
   YB51_2935
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 RNase_II_C_S1 CSD FaeA
Other DBs
NCBI-ProteinID: AGW86959
Position
592738..595107
AA seq 789 aa
MKNDIINYIKEVGPVTMDQLADQFGASSAKSFTDLVKLVSSMEGSRQLVFDNAGRITLPA
PKISKNKVTLQGIFRAHKSGFGFVTIDEEEDDLFVSRDDVNFAIEGDRVEIAIKKVADRL
KGTAAEAEVIDILEHSLKTAVGLIVFDEDKPEYAGYIKSKNQKIAQKIYIKKSPLVLTGT
EILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLEVLESMDIVSEFPDEVLAEANRV
PESPSEQDFAGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTE
GSALDQEAIKRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDRKGKVVKH
WIGQTVIKTNFRMTYSDVNDMIAGNQEKLDKYKTIVPSVELMVKLHETLETMRYKRGALN
FDTAEAKIIVNKDGLPVDIQLRQRGIAERMIESFMLVANECVAEHFAKLDLPFIYRIHEE
PKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRSMQQAR
YSEHNHGHYGLGAEFYTHFTSPIRRYPDLLVHRMVRDYGHNPAEKAEHFEQVIPELAKSS
SSLERRAIEAEREVEAMKKAEFMQEFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHITNL
NEYYQFHERTLTLQGEKSGRVFRVGQPIRIKLTRADKMTGEIDFAHVPSELDIVEKALKA
KRRTASHSNRDRDDRSGRGRGKHHKQEAAGRDSGRHKSGKDHKSKSGKKDKKKKPFYKEV
AKKNKKKRR
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgaaaaacgatattattaactatattaaagaagttggtcctgtgaccatggaccagctg
gcagatcagtttggagccagttctgctaagagctttacagacttggtcaagctggtttct
agcatggaaggcagtcgtcaacttgtctttgacaatgctgggcggattactcttcctgct
ccaaaaatctccaagaacaaggtgaccttacagggtattttccgtgcccacaagtcgggt
tttggctttgtgaccattgacgaggaggaagatgatctctttgtcagccgtgacgatgtt
aactttgctatcgaaggtgacagagttgaaattgcaatcaaaaaggttgcagatcgtctc
aagggaactgccgcggaagcggaagtcattgatattttggaacatagcctgaaaacagcg
gtgggcttgattgtctttgacgaagataagccagaatatgcaggctacatcaagtctaaa
aaccagaaaattgctcagaagatttacatcaagaagtcacctctggtattgaccggaacg
gaaatcctaaaagttgatatcgaagcttatccaaacaagaaacgggaccactttgttgcg
accattcgggacgtggtgggccacaaggacgatgtgggcatcgatgtcttggaagttttg
gagtccatggatatcgtgtcggagtttccagatgaagtcttggcagaggccaatcgggta
ccagaaagtccgtctgaacaggactttgcaggacgtttggacctgcgagatgaaattatc
ttcaccatagacggtgcggatgccaaggacttggacgatgcggtccatatcaagcagctt
aagaacggcaatctggagctaggtgtccatatcgctgatgtcagctactatgtgacggaa
ggctctgccttggatcaagaggccatcaagcgtggaacgtctgtctatgtgaccgaccgt
gtggtgccaatgttgccagaacgtttgtcaaacggcatctgctctcttaatccaaacgtg
gaccgtctaacccagtcggctattatggaaattgaccgcaagggcaaggttgtcaagcac
tggattggccaaacggtcatcaaaaccaacttccgcatgacctattctgatgtcaatgac
atgattgcgggaaatcaggaaaagctggacaaatacaagacaatcgtgccaagtgttgag
ctcatggtcaaactccatgaaaccctggaaaccatgcgctacaagcgtggggctctcaac
tttgatacagctgaagctaaaatcatcgtcaacaaggatggtctgccagtcgatatccag
ctacgtcagcgaggcattgctgagcggatgattgagtccttcatgctggttgccaatgag
tgcgttgctgagcattttgccaaactggacctgcctttcatctatcggatccacgaggag
cctaagtcagacaagctgcaaaagttcatcgactatgcgaccagctttggtctgacggtc
tatggtacggccagctctatcagccaggacgcccttcaggacctcatggagcgggtcaag
gatgaaccctatgcggatgtcctcaacatgatgttgctgcgttctatgcagcaggcacgc
tactcggagcacaaccacggccattacggtctgggtgccgagttctacacccactttacc
agccctatccgtcgttatcccgacttgctggttcaccgcatggtgcgggactatggtcat
aatcctgcggaaaaagcagagcattttgagcaggttatacctgagcttgccaagtcttcg
tccagtttagaacgccgtgccattgaggcagagcgggaagtcgaagccatgaagaaggca
gagttcatgcaagaatttgttgggcaagagtttgatggtgtcgtatctagcgtagtcaag
tttggtctttttgtagagttaccaaacacggttgaaggcctgattcatatcaccaacctc
aacgaatactatcagttccacgagcgaactctgaccttgcagggtgagaaatcaggtcgg
gtcttccgtgtcggtcagccaattcgtatcaagctaacgcgggcggacaagatgacaggg
gaaatcgattttgcccacgtgccgtccgagctggatattgtcgaaaaagctctgaaagcc
aaacggagaactgctagtcactctaaccgtgaccgtgatgatcggtcagggcgaggacgg
ggcaagcaccacaaacaagaagctgctggtcgcgacagcggacgtcacaagtctggaaaa
gaccacaagtcaaaaagtggcaaaaaagacaagaaaaagaaaccattttacaaagaagtg
gctaaaaagaacaagaagaaaaggagatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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