KEGG   Stenotrophomonas sp. KCTC 12332: AXG53_07680
Entry
AXG53_07680       CDS       T04408                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
stek  Stenotrophomonas sp. KCTC 12332
Pathway
stek03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:stek00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AXG53_07680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:stek03021]
    AXG53_07680
   03019 Messenger RNA biogenesis [BR:stek03019]
    AXG53_07680
Transcription machinery [BR:stek03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AXG53_07680
Messenger RNA biogenesis [BR:stek03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AXG53_07680
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_25 Spore_III_AA AAA OB_RNB ResIII AAA_22 Mor
Other DBs
NCBI-ProteinID: AMJ56541
UniProt: A0A126NMJ7
Position
1808474..1810243
AA seq 589 aa
MSENTPSETGSTDAPVEKRVRKPRVAKAVENADSGASAPAQPALPLPAAPAAPAPVAAAP
APTPTAPPPAPAAAASSNDGQAQAPASSGDNAPQGGGQDGGDGNQQRYGQQNQQNQQGQG
QGQGNRRDRFRNRRDRDRNRPRDDNGMSNDGGNEPFVPRSMPGVPEGFPVYSLSDLKRMP
AQKLLEIAEQLQISEGVARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAAE
ASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPIEASKN
KVLFENLTPLFPRKRFTLERGNGSSEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQ
QIATAITTNHPEVHMIVLLVDERPEEVTEMQRTVRGEVVSSTFDEPAARHVQVAEMVIER
AKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVEE
GGSLTIIATALVETGSKMDEVIYEEFKGTGNSEVHLNRRITEKRVYPAIDINRSGTRRED
LLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKNTKSNDEFFGSMKR
NT seq 1770 nt   +upstreamnt  +downstreamnt
ttgtccgagaacactccttccgaaaccgggagcaccgacgctcctgtcgagaagcgcgtg
cgcaagccgcgtgttgccaaagcagttgaaaacgccgatagcggtgcctctgctcccgcc
cagccggccctgccgttgccagccgccccggccgctccggcaccggtagccgccgcaccc
gcacctacccccactgctccgccgcccgcgcccgccgcggcagcgtccagcaatgatggc
caggcccaggcacccgcaagctcaggcgacaacgccccgcaaggtggcggccaggacggc
ggtgacggcaaccagcagcgctacggccagcagaatcagcagaatcagcagggccaaggc
cagggtcagggcaaccgccgcgaccgtttccgcaaccgtcgcgaccgtgaccgcaaccgt
ccgcgtgacgacaacggcatgagcaacgacggcggcaacgagccgttcgtaccgcgttcg
atgccgggcgtgccggaaggcttcccggtctactcgctgagcgacctgaagcggatgccg
gcacagaagctgctggaaatcgccgagcagctgcagatctccgaaggcgtggcccgtgcc
cgcaagcaggatgtgatcttcgccctgctcaaggtgctgacccgccacggtgacggcgtc
gccgccgacggcgtactggaaatcctgccggacggcttcggtttcctgcgcgcagccgag
gccagctacctggccggcccggacgacacctacatctcgcccagccagatccgccgcttc
aacctgcgtaccggcgaccacctgtccggccgcatccgcttcccgaaggatggcgagcgt
tacttcgcgctgtcgatcgtggacaccatcaacggtgagccgatcgaagcctcgaagaac
aaggtgctgttcgaaaacctgaccccgctgttcccgcgcaagcgcttcacgcttgagcgc
ggcaatggctcctcggaagacatcaccggtcgtatcctcgacctgatggcaccgcagggc
aagggccagcgcgcattgatcgtctcgccgccgaaggccggtaagacgatgatgatgcag
cagatcgccacggccatcaccaccaatcatccggaagtgcacatgatcgtgctgctggtg
gatgagcgcccggaagaagtgaccgaaatgcagcgcacggtgcgcggcgaagtggtctcc
tctaccttcgacgagccggccgcgcgccacgtgcaggttgccgaaatggtgatcgagcgt
gccaagcgcctggtcgagcacaagaaggacgtggtgatcctgctggactcgatcacccgc
ctggcccgcgcctacaacaacgtcgtaccgagctccggcaaggtcctgactggtggtgtg
gacgccaacgccctgcaccgtccgaagcgtttcttcggtgcggcgcgtaatgttgaagaa
ggcggctcgctgaccatcatcgccaccgcgctggttgaaaccggctcgaagatggacgaa
gtgatctacgaagaattcaagggcaccggcaacagcgaagtgcatttgaaccgtcgcatc
accgagaagcgcgtctacccggccatcgacatcaaccgttcgggcacccgccgcgaagac
ctgctgatcgagccggagctgctgcagaagatctggatcctgcgcaagctgctgcacccg
atggacgaaatcgccgcgatggaattcctgttggacaagatgaagaacaccaagtccaac
gacgagttcttcggttcgatgaagcgctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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