KEGG   Streptococcus thermophilus ASCC 1275: T303_06785
Entry
T303_06785        CDS       T03360                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sthe  Streptococcus thermophilus ASCC 1275
Pathway
sthe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sthe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    T303_06785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sthe03019]
    T303_06785
Messenger RNA biogenesis [BR:sthe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     T303_06785
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B Lactamase_B_2
Other DBs
NCBI-ProteinID: AIC24560
Position
complement(1248829..1250490)
AA seq 553 aa
MSDIKIIALGGVRENAKNLYIVEINDSIFILDAGLRYPENEQLGVDFVIPNLDYLVENKD
RIQGIFLTHGHADAIGALPYILQDAKVPVFGSSLTIELAKLFVKNAGVNKFNNFHVIDSE
TEIEFDDAVVSFFKTTHSIPESMGIVLGTDRGNIVYTGDFKFDQAARPYYKTDLGRLAEI
GREGVLALLSDSANATSTEQTASEAEVGQEIDQVIADADGRVIIAAVASNLVRIQQVFDS
AAEHGRRVVLTGFDVENIVRTAIRLKKLTVEHEKLIVKPKDMNKFEDHELIILENGRMGE
PIDGLQKMAVGRHRYVQIKDGDLVYIVTTPSIAKEAAVARVNNAIYKAGGAVKMITQNLR
VSGHANARELQLMLNLLRPQYLFPVQGEYRELQAHAELALEVGILPENIYIVKRGDIMHL
SEDQGFLLEGTVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVAITVNKKERKIVSK
ARVNTRGFVYVKKSRDILSESADIVNATVENYLAGDSFDWGELKGAVRDDVAKFLFDQTK
RRPAILPVVMEVR
NT seq 1662 nt   +upstreamnt  +downstreamnt
atgagcgatattaaaattattgccctaggtggagtgcgtgaaaatgctaagaacctctat
attgttgaaattaacgactccatctttatcttggatgctggtctaaggtatcctgaaaat
gaacaattaggtgttgactttgttatccctaatttagattatttggttgaaaataaagac
cgtatccagggaattttcttgacgcatgggcacgctgacgccattggtgccctaccttat
atcttgcaagacgccaaagtaccagtctttgggtcatcacttactattgagttagctaag
ctttttgtaaaaaatgctggcgttaataaattcaataatttccatgtcattgactcagaa
actgaaattgaattcgatgatgcagtggtctcattctttaagacaactcactctatccca
gaatcaatggggattgttcttgggacggaccgaggcaatattgtctatactggtgatttc
aagtttgaccaagctgctcgcccttactacaaaactgatttaggtcgcttggctgaaatc
ggtcgagaaggtgtcttggccctcttgtcagactcagcaaatgcgacaagtactgaacaa
acagcttcagaagcagaagttggccaagagattgaccaagttattgccgatgcagatgga
cgtgttattattgcagcagttgcctcaaacttggttcgtattcaacaagtctttgattca
gctgccgaacatggacgtcgcgttgttcttacaggttttgacgttgaaaatattgttcgt
acagctatccgtcttaagaaattgactgtggagcatgagaagctcattgttaaaccaaag
gatatgaacaagttcgaagaccacgagttgattattctcgaaaatggacgtatgggagag
ccaatcgacggtcttcaaaaaatggcagttggccgtcaccgttatgttcaaatcaaagat
ggggacttagtttatatcgtaaccacaccaagtattgctaaagaagcagcggtcgcacgc
gtaaacaatgctatctataaggctggtggggctgttaagatgattacacagaatcttcgt
gtatctggacatgccaatgctcgtgagcttcaattgatgctgaatcttcttcgtccacag
tatcttttcccagtccaaggggagtaccgtgaacttcaagctcatgctgagctagccctt
gaagttgggatccttccagaaaacatctacattgttaagcgtggagatatcatgcactta
tcagaggaccaaggtttccttcttgaaggtactgtcccagctggtgatgttatgattgat
ggtaatgctatcggtgatgttggaaatatcgtgcttcgtgaccgtaaggtcttgtctgaa
gacggtatctttatcgttgctattacagtcaataaaaaggagcgtaagattgtctctaaa
gcgcgtgtcaatacgcgtggcttcgtctatgttaaaaagagccgtgatatcctaagtgag
tctgctgatattgtcaatgcaactgttgaaaattacttggcaggagatagttttgattgg
ggagaacttaaaggtgcggttcgcgatgatgtggctaagttcctctttgaccaaaccaaa
cgtcgcccagcaattcttccagttgttatggaagtacgttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

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